pyproject.toml

[build-system]
requires = ["setuptools>=61.0", "setuptools_scm[toml]>=6.2"]

[tool.setuptools]
packages = ["oligo_designer_toolsuite"]

[tool.setuptools.dynamic]
#version = {attr = "my_package.VERSION"}
readme = { file = "README.md" }

[tool.setuptools_scm]
write_to = "oligo_designer_toolsuite/_version.py"

[project]
name = "oligo-designer-toolsuite"
dynamic = ["version"]
#version = "1.0.2"
authors = [
  { name = "Lisa Barros de Andrade e Sousa" },
  { name = "Isra Mekki" },
  { name = "Francesco Campi" },
  { name = "Louis Kümmerle" },
  { name = "Chelsea Bright" },
]
maintainers = [
  { name = "Lisa Barros de Andrade e Sousa", email = "lisa.barros.andrade.sousa@gmail.com" },
  { name = "Isra Mekki", email = "isra.mekki@helmholtz-muenchen.de" },
]
description = "Develop custom oligo design pipelines."
keywords = [
  "bioinformatics",
  "probes",
  "oligo nucleotides",
  "probe design",
  "oligo design",
]
readme = "README.md"
requires-python = ">=3.9"
classifiers = [
  "Programming Language :: Python :: 3",
  "License :: OSI Approved :: MIT License",
  "Operating System :: OS Independent",
]
dependencies = [
  "datetime",
  "argparse",
  "numpy",
  "pandas",
  "scipy",
  "iteration_utilities",
  "Bio",
  "pyyaml",
  "networkx",
  "joblib",
  "seqfold",
  "effidict",
  "joblib_progress",
  "oligo-designer-toolsuite-ai-filters",
  "ipywidgets",
]

[project.optional-dependencies]
dev = ["pytest"]

[project.scripts]
genomic_region_generator = "oligo_designer_toolsuite.pipelines._genomic_region_generator:main"
oligo_seq_probe_designer = "oligo_designer_toolsuite.pipelines._oligo_seq_probe_designer:main"
scrinshot_probe_designer = "oligo_designer_toolsuite.pipelines._scrinshot_probe_designer:main"
seqfish_plus_probe_designer = "oligo_designer_toolsuite.pipelines._seqfish_plus_probe_designer:main"
merfish_probe_designer = "oligo_designer_toolsuite.pipelines._merfish_probe_designer:main"

[project.urls]
documentation = "https://oligo-designer-toolsuite.readthedocs.io/"
repository = "https://github.com/HelmholtzAI-Consultants-Munich/oligo-designer-toolsuite"