searchparameter_searcher.ipynb

{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "\n",
    "## Search through SearchParameter properties summaries\n",
    "\n",
    "*USE Python 3.7 to maintain order of Json files*\n",
    "\n",
    "- Fetch package for IG\n",
    "- Fetch package for core\n",
    "- search for SP parameters\n",
    "\n",
    "\n",
    "*Note need a successful build to generate since based on ig output local file\n",
    "alternatively use package.files to generate*"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### import python modules"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {},
   "outputs": [],
   "source": [
    "import Summary_maker.title_map as tm\n",
    "import os, json"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Get file and return as dict"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Write to file"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Loop through SPs"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "['SearchParameter-us-core-immunization-status.json',\n",
       " 'SearchParameter-us-core-condition-category.json',\n",
       " 'SearchParameter-us-core-patient-identifier.json',\n",
       " 'SearchParameter-us-core-careteam-role.json',\n",
       " 'SearchParameter-us-core-practitioner-identifier.json',\n",
       " 'SearchParameter-us-core-documentreference-category.json',\n",
       " 'SearchParameter-us-core-goal-description.json',\n",
       " 'SearchParameter-us-core-careteam-status.json',\n",
       " 'SearchParameter-us-core-location-address-city.json',\n",
       " 'SearchParameter-us-core-patient-id.json',\n",
       " 'SearchParameter-us-core-servicerequest-id.json',\n",
       " 'SearchParameter-us-core-practitioner-id.json',\n",
       " 'SearchParameter-us-core-condition-encounter.json',\n",
       " 'SearchParameter-us-core-servicerequest-status.json',\n",
       " 'SearchParameter-us-core-immunization-patient.json',\n",
       " 'SearchParameter-us-core-goal-patient.json',\n",
       " 'SearchParameter-us-core-device-type.json',\n",
       " 'SearchParameter-us-core-patient-name.json',\n",
       " 'SearchParameter-us-core-practitionerrole-specialty.json',\n",
       " 'SearchParameter-us-core-encounter-identifier.json',\n",
       " 'SearchParameter-us-core-immunization-date.json',\n",
       " 'SearchParameter-us-core-careteam-patient.json',\n",
       " 'SearchParameter-us-core-careplan-date.json',\n",
       " 'SearchParameter-us-core-diagnosticreport-patient.json',\n",
       " 'SearchParameter-us-core-goal-target-date.json',\n",
       " 'SearchParameter-us-core-procedure-patient.json',\n",
       " 'SearchParameter-us-core-documentreference-status.json',\n",
       " 'SearchParameter-us-core-medicationrequest-authoredon.json',\n",
       " 'SearchParameter-us-core-encounter-id.json',\n",
       " 'SearchParameter-us-core-relatedperson-id.json',\n",
       " 'SearchParameter-us-core-location-address-postalcode.json',\n",
       " 'SearchParameter-us-core-relatedperson-patient.json',\n",
       " 'SearchParameter-us-core-medicationrequest-status.json',\n",
       " 'SearchParameter-us-core-condition-recorded-date.json',\n",
       " 'SearchParameter-us-core-race.json',\n",
       " 'SearchParameter-us-core-patient-family.json',\n",
       " 'SearchParameter-us-core-careplan-patient.json',\n",
       " 'SearchParameter-us-core-encounter-discharge-disposition.json',\n",
       " 'SearchParameter-us-core-observation-patient.json',\n",
       " 'SearchParameter-us-core-condition-code.json',\n",
       " 'SearchParameter-us-core-device-patient.json',\n",
       " 'SearchParameter-us-core-allergyintolerance-patient.json',\n",
       " 'SearchParameter-us-core-condition-patient.json',\n",
       " 'SearchParameter-us-core-careplan-status.json',\n",
       " 'SearchParameter-us-core-encounter-status.json',\n",
       " 'SearchParameter-us-core-procedure-status.json',\n",
       " 'SearchParameter-us-core-patient-birthdate.json',\n",
       " 'SearchParameter-us-core-encounter-date.json',\n",
       " 'SearchParameter-us-core-documentreference-type.json',\n",
       " 'SearchParameter-us-core-servicerequest-authored.json',\n",
       " 'SearchParameter-us-core-servicerequest-patient.json',\n",
       " 'SearchParameter-us-core-condition-abatement-date.json',\n",
       " 'SearchParameter-us-core-observation-status.json',\n",
       " 'SearchParameter-us-core-diagnosticreport-category.json',\n",
       " 'SearchParameter-us-core-observation-date.json',\n",
       " 'SearchParameter-us-core-diagnosticreport-status.json',\n",
       " 'SearchParameter-us-core-condition-asserted-date.json',\n",
       " 'SearchParameter-us-core-observation-category.json',\n",
       " 'SearchParameter-us-core-organization-address.json',\n",
       " 'SearchParameter-us-core-encounter-patient.json',\n",
       " 'SearchParameter-us-core-medicationrequest-encounter.json',\n",
       " 'SearchParameter-us-core-encounter-type.json',\n",
       " 'SearchParameter-us-core-patient-given.json',\n",
       " 'SearchParameter-us-core-condition-onset-date.json',\n",
       " 'SearchParameter-us-core-location-name.json',\n",
       " 'SearchParameter-us-core-servicerequest-code.json',\n",
       " 'SearchParameter-us-core-observation-code.json',\n",
       " 'SearchParameter-us-core-documentreference-period.json',\n",
       " 'SearchParameter-us-core-practitioner-name.json',\n",
       " 'SearchParameter-us-core-location-address.json',\n",
       " 'SearchParameter-us-core-medicationrequest-intent.json',\n",
       " 'SearchParameter-us-core-documentreference-date.json',\n",
       " 'SearchParameter-us-core-allergyintolerance-clinical-status.json',\n",
       " 'SearchParameter-us-core-ethnicity.json',\n",
       " 'SearchParameter-us-core-procedure-date.json',\n",
       " 'SearchParameter-us-core-diagnosticreport-date.json',\n",
       " 'SearchParameter-us-core-documentreference-patient.json',\n",
       " 'SearchParameter-us-core-medicationrequest-patient.json',\n",
       " 'SearchParameter-us-core-encounter-class.json',\n",
       " 'SearchParameter-us-core-careplan-category.json',\n",
       " 'SearchParameter-us-core-documentreference-id.json',\n",
       " 'SearchParameter-us-core-condition-clinical-status.json',\n",
       " 'SearchParameter-us-core-patient-gender.json',\n",
       " 'SearchParameter-us-core-procedure-code.json',\n",
       " 'SearchParameter-us-core-goal-lifecycle-status.json',\n",
       " 'SearchParameter-us-core-diagnosticreport-code.json',\n",
       " 'SearchParameter-us-core-encounter-location.json',\n",
       " 'SearchParameter-us-core-servicerequest-category.json',\n",
       " 'SearchParameter-us-core-organization-name.json',\n",
       " 'SearchParameter-us-core-patient-gender-identity.json',\n",
       " 'SearchParameter-us-core-practitionerrole-practitioner.json',\n",
       " 'SearchParameter-us-core-location-address-state.json']"
      ]
     },
     "execution_count": 3,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "us_core = '/Users/ehaas/.fhir/packages/hl7.fhir.us.core#dev/package'\n",
    "fhir_r4 = '/Users/ehaas/.fhir/packages/hl7.fhir.r4.core#4.0.1/package'\n",
    "#f_name = 'us-core-patient'\n",
    "#n_path = '/Users/ehaas/.fhir/packages/hl7.fhir.us.core#dev' # package file keeps disappearing\n",
    "#in_path = '//ERICS-AIR-2/ehaas/Documents/FHIR/US-Core-R4/output'  # use local build dir.\n",
    "us_core_files = [x for x in os.listdir(us_core) if x.startswith(\"SearchParameter\") and x.endswith('json')]\n",
    "us_core_files"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "loop through all sd and print out the element the element you want\n",
    "\n",
    "filter on the element properties you want"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 41,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "   - CareTeam `patient` search parameter \n",
      "   - CareTeam `role` search parameter \n",
      "   - CareTeam `status` search parameter \n",
      "   - Condition `abatement-date` search parameter \n",
      "   - Condition `asserted-date` search parameter \n",
      "   - Condition `category` search parameter \n",
      "   - Condition `clinical-status` search parameter \n",
      "   - Condition `code` search parameter \n",
      "   - Condition `encounter` search parameter \n",
      "   - Condition `onset-date` search parameter \n",
      "   - Condition `patient` search parameter \n",
      "   - Condition `recorded-date` search parameter \n",
      "   - DiagnosticReport `category` search parameter \n",
      "   - DiagnosticReport `code` search parameter \n",
      "   - DiagnosticReport `date` search parameter \n",
      "   - DiagnosticReport `patient` search parameter \n",
      "   - DiagnosticReport `status` search parameter \n",
      "   - Encounter `_id` search parameter \n",
      "   - Encounter `class` search parameter \n",
      "   - Encounter `date` search parameter \n",
      "   - Encounter `discharge-disposition` search parameter \n",
      "   - Encounter `identifier` search parameter \n",
      "   - Encounter `location` search parameter \n",
      "   - Encounter `patient` search parameter \n",
      "   - Encounter `status` search parameter \n",
      "   - Encounter `type` search parameter \n",
      "   - Goal `description` search parameter \n",
      "   - Goal `lifecycle-status` search parameter \n",
      "   - Goal `patient` search parameter \n",
      "   - Goal `target-date` search parameter \n",
      "   - Location `address-city` search parameter \n",
      "   - Location `address-postalcode` search parameter \n",
      "   - Location `address-state` search parameter \n",
      "   - Location `address` search parameter \n",
      "   - Location `name` search parameter \n",
      "   - Observation `category` search parameter \n",
      "   - Observation `code` search parameter \n",
      "   - Observation `date` search parameter \n",
      "   - Observation `patient` search parameter \n",
      "   - Observation `status` search parameter \n",
      "   - Organization `address` search parameter \n",
      "   - Organization `name` search parameter \n",
      "   - Patient `_id` search parameter \n",
      "   - Patient `birthdate` search parameter \n",
      "   - Patient `ethnicity` search parameter \n",
      "   - Patient `family` search parameter \n",
      "   - Patient `gender-identity` search parameter \n",
      "   - Patient `gender` search parameter \n",
      "   - Patient `given` search parameter \n",
      "   - Patient `identifier` search parameter \n",
      "   - Patient `name` search parameter \n",
      "   - Patient `race` search parameter \n",
      "   - Practitioner `_id` search parameter \n",
      "   - Practitioner `identifier` search parameter \n",
      "   - Practitioner `name` search parameter \n",
      "   - PractitionerRole `practitioner` search parameter \n",
      "   - PractitionerRole `specialty` search parameter \n",
      "   - Procedure `code` search parameter \n",
      "   - Procedure `date` search parameter \n",
      "   - Procedure `patient` search parameter \n",
      "   - Procedure `status` search parameter \n",
      "   - RelatedPerson `_id` search parameter \n",
      "   - RelatedPerson `patient` search parameter \n",
      "   - ServiceRequest `_id` search parameter \n",
      "   - ServiceRequest `authored` search parameter \n",
      "   - ServiceRequest `category` search parameter \n",
      "   - ServiceRequest `code` search parameter \n",
      "   - ServiceRequest `patient` search parameter \n",
      "   - ServiceRequest `status` search parameter \n"
     ]
    }
   ],
   "source": [
    "def open_file(in_path, f_name): # get files\n",
    "    with open(f'{in_path}/{f_name}', encoding=\"utf8\") as f:\n",
    "        r = f.read()\n",
    "        return(json.loads(r))\n",
    "constraints = {}\n",
    "sps = []\n",
    "test_resources = [\n",
    "\"CareTeam\",\n",
    "\"Condition\",\n",
    "\"DiagnosticReport\",\n",
    "\"Encounter\",\n",
    "\"Goal\",\n",
    "\"Location\",\n",
    "\"Observation\",\n",
    "\"Organization\",\n",
    "\"Patient\",\n",
    "\"Practitioner\",\n",
    "\"PractitionerRole\",\n",
    "\"Procedure\",\n",
    "\"RelatedPerson\",\n",
    "\"ServiceRequest\",\n",
    "]\n",
    "for i in us_core_files: \n",
    "    \n",
    "    sp_dict = open_file(us_core,i)\n",
    "    \n",
    "    try:\n",
    "        assert sp_dict['base'][0] in test_resources\n",
    "        #sps.append({\"base\":sp_dict['base'][0],\"code\":sp_dict['code']})\n",
    "        sps.append(sp_dict['base'][0]  + \" `\" + sp_dict['code'] + \"` search parameter \")\n",
    "    except:\n",
    "        pass\n",
    "\n",
    "for sp in sorted(sps):\n",
    "    print(\"   - \"+sp)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  }
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