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README

This document describes files used to test the CO1 Classifier web portal.

Folders

  1. TestFastas
  2. TestResults

How to cite

Training sets

Porter, T.M., & Hajibabaei, M. (2018) Automated high throughput animal CO1 metabarcode classification. Scientific Reports, 8, 4226.

RDP classifier

Wang et al. (2007) Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Applied and Environmental Microbiology, 73: 5261.

Additional information

The CO1 Classifier training sets are available at https://github.com/terrimporter/CO1Classifier

For additional information on choosing appropriate bootstrap support cutoff values, see Porter & Hajibabaei (2018) https://www.nature.com/articles/s41598-018-22505-4

For additional information on how to run the RDP classifier, see the RDPclassifier 2.12 README.

The RDP classifier v2.12 can be downloaded from: https://sourceforge.net/projects/rdp-classifier/

Acknowledgements

Teresita Porter would like to acknowledge support from the Canadian federal Genomics Research & Development Initiative (GRDI) interdepartmental EcoBiomics project.