From 08bbeae4ef9f52711a2996962ad8f90d433aea6c Mon Sep 17 00:00:00 2001 From: Colleen Xu Date: Thu, 24 Jun 2021 11:28:23 -0700 Subject: [PATCH 1/2] update to replace semantic: ChemicalSubstance lines with semantic: SmallMolcule lines quick fix for biolink v2.0 compliance --- ehr_risk_kp.yaml | 288 +++++++++++++++++++++++------------------------ 1 file changed, 144 insertions(+), 144 deletions(-) diff --git a/ehr_risk_kp.yaml b/ehr_risk_kp.yaml index 5eab783..452a1ca 100644 --- a/ehr_risk_kp.yaml +++ b/ehr_risk_kp.yaml @@ -705,10 +705,10 @@ components: ChemicalSubstance0-ChemicalSubstance0-associated_with_risk_for: - inputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:associated_with_risk_for @@ -723,10 +723,10 @@ components: ChemicalSubstance0-ChemicalSubstance0-negatively_associated_with_risk_for: - inputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:negatively_associated_with_risk_for @@ -741,10 +741,10 @@ components: ChemicalSubstance0-ChemicalSubstance0-negatively_correlated_with: - inputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:negatively_correlated_with @@ -759,10 +759,10 @@ components: ChemicalSubstance0-ChemicalSubstance0-related_to: - inputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:related_to @@ -777,10 +777,10 @@ components: ChemicalSubstance0-ChemicalSubstance5-associated_with_risk_for: - inputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:associated_with_risk_for @@ -795,10 +795,10 @@ components: ChemicalSubstance0-ChemicalSubstance5-negatively_associated_with_risk_for: - inputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:negatively_associated_with_risk_for @@ -813,10 +813,10 @@ components: ChemicalSubstance0-ChemicalSubstance5-negatively_correlated_with: - inputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:negatively_correlated_with @@ -831,10 +831,10 @@ components: ChemicalSubstance0-ChemicalSubstance5-related_to: - inputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:related_to @@ -849,7 +849,7 @@ components: ChemicalSubstance0-Disease2-associated_with_risk_for: - inputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: MONDO semantic: Disease @@ -867,7 +867,7 @@ components: ChemicalSubstance0-Disease2-negatively_associated_with_risk_for: - inputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: MONDO semantic: Disease @@ -885,7 +885,7 @@ components: ChemicalSubstance0-Disease2-negatively_correlated_with: - inputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: MONDO semantic: Disease @@ -903,7 +903,7 @@ components: ChemicalSubstance0-Disease2-related_to: - inputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: MONDO semantic: Disease @@ -921,7 +921,7 @@ components: ChemicalSubstance0-Disease3-associated_with_risk_for: - inputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: NCIT semantic: Disease @@ -939,7 +939,7 @@ components: ChemicalSubstance0-Disease3-negatively_associated_with_risk_for: - inputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: NCIT semantic: Disease @@ -957,7 +957,7 @@ components: ChemicalSubstance0-Disease3-negatively_correlated_with: - inputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: NCIT semantic: Disease @@ -975,7 +975,7 @@ components: ChemicalSubstance0-Disease3-related_to: - inputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: NCIT semantic: Disease @@ -993,7 +993,7 @@ components: ChemicalSubstance0-Disease4-associated_with_risk_for: - inputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: SNOMEDCT semantic: Disease @@ -1011,7 +1011,7 @@ components: ChemicalSubstance0-Disease4-negatively_associated_with_risk_for: - inputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: SNOMEDCT semantic: Disease @@ -1029,7 +1029,7 @@ components: ChemicalSubstance0-Disease4-negatively_correlated_with: - inputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: SNOMEDCT semantic: Disease @@ -1047,7 +1047,7 @@ components: ChemicalSubstance0-Disease4-related_to: - inputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: SNOMEDCT semantic: Disease @@ -1065,7 +1065,7 @@ components: ChemicalSubstance0-PhenotypicFeature1-associated_with_risk_for: - inputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: HP semantic: PhenotypicFeature @@ -1083,7 +1083,7 @@ components: ChemicalSubstance0-PhenotypicFeature1-negatively_associated_with_risk_for: - inputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: HP semantic: PhenotypicFeature @@ -1101,7 +1101,7 @@ components: ChemicalSubstance0-PhenotypicFeature1-negatively_correlated_with: - inputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: HP semantic: PhenotypicFeature @@ -1119,7 +1119,7 @@ components: ChemicalSubstance0-PhenotypicFeature1-related_to: - inputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: HP semantic: PhenotypicFeature @@ -1137,7 +1137,7 @@ components: ChemicalSubstance0-PhenotypicFeature3-associated_with_risk_for: - inputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: NCIT semantic: PhenotypicFeature @@ -1155,7 +1155,7 @@ components: ChemicalSubstance0-PhenotypicFeature3-negatively_associated_with_risk_for: - inputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: NCIT semantic: PhenotypicFeature @@ -1173,7 +1173,7 @@ components: ChemicalSubstance0-PhenotypicFeature3-negatively_correlated_with: - inputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: NCIT semantic: PhenotypicFeature @@ -1191,7 +1191,7 @@ components: ChemicalSubstance0-PhenotypicFeature3-related_to: - inputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: NCIT semantic: PhenotypicFeature @@ -1209,7 +1209,7 @@ components: ChemicalSubstance0-PhenotypicFeature4-associated_with_risk_for: - inputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: SNOMEDCT semantic: PhenotypicFeature @@ -1227,7 +1227,7 @@ components: ChemicalSubstance0-PhenotypicFeature4-negatively_associated_with_risk_for: - inputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: SNOMEDCT semantic: PhenotypicFeature @@ -1245,7 +1245,7 @@ components: ChemicalSubstance0-PhenotypicFeature4-negatively_correlated_with: - inputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: SNOMEDCT semantic: PhenotypicFeature @@ -1263,7 +1263,7 @@ components: ChemicalSubstance0-PhenotypicFeature4-related_to: - inputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: SNOMEDCT semantic: PhenotypicFeature @@ -1281,7 +1281,7 @@ components: ChemicalSubstance0-Procedure3-associated_with_risk_for: - inputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: NCIT semantic: Procedure @@ -1299,7 +1299,7 @@ components: ChemicalSubstance0-Procedure3-negatively_associated_with_risk_for: - inputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: NCIT semantic: Procedure @@ -1317,7 +1317,7 @@ components: ChemicalSubstance0-Procedure3-negatively_correlated_with: - inputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: NCIT semantic: Procedure @@ -1335,7 +1335,7 @@ components: ChemicalSubstance0-Procedure3-related_to: - inputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: NCIT semantic: Procedure @@ -1353,10 +1353,10 @@ components: ChemicalSubstance5-ChemicalSubstance0-associated_with_risk_for: - inputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:UNII\:{inputs[0]} AND subject.type:ChemicalSubstance AND predicate.type:associated_with_risk_for @@ -1371,10 +1371,10 @@ components: ChemicalSubstance5-ChemicalSubstance0-negatively_associated_with_risk_for: - inputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:UNII\:{inputs[0]} AND subject.type:ChemicalSubstance AND predicate.type:negatively_associated_with_risk_for @@ -1389,10 +1389,10 @@ components: ChemicalSubstance5-ChemicalSubstance0-negatively_correlated_with: - inputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:UNII\:{inputs[0]} AND subject.type:ChemicalSubstance AND predicate.type:negatively_correlated_with @@ -1407,10 +1407,10 @@ components: ChemicalSubstance5-ChemicalSubstance0-related_to: - inputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:UNII\:{inputs[0]} AND subject.type:ChemicalSubstance AND predicate.type:related_to @@ -1425,10 +1425,10 @@ components: ChemicalSubstance5-ChemicalSubstance5-associated_with_risk_for: - inputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:UNII\:{inputs[0]} AND subject.type:ChemicalSubstance AND predicate.type:associated_with_risk_for @@ -1443,10 +1443,10 @@ components: ChemicalSubstance5-ChemicalSubstance5-negatively_associated_with_risk_for: - inputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:UNII\:{inputs[0]} AND subject.type:ChemicalSubstance AND predicate.type:negatively_associated_with_risk_for @@ -1461,10 +1461,10 @@ components: ChemicalSubstance5-ChemicalSubstance5-negatively_correlated_with: - inputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:UNII\:{inputs[0]} AND subject.type:ChemicalSubstance AND predicate.type:negatively_correlated_with @@ -1479,10 +1479,10 @@ components: ChemicalSubstance5-ChemicalSubstance5-related_to: - inputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:UNII\:{inputs[0]} AND subject.type:ChemicalSubstance AND predicate.type:related_to @@ -1497,7 +1497,7 @@ components: ChemicalSubstance5-Disease2-associated_with_risk_for: - inputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: MONDO semantic: Disease @@ -1515,7 +1515,7 @@ components: ChemicalSubstance5-Disease2-negatively_associated_with_risk_for: - inputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: MONDO semantic: Disease @@ -1533,7 +1533,7 @@ components: ChemicalSubstance5-Disease2-negatively_correlated_with: - inputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: MONDO semantic: Disease @@ -1551,7 +1551,7 @@ components: ChemicalSubstance5-Disease2-related_to: - inputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: MONDO semantic: Disease @@ -1569,7 +1569,7 @@ components: ChemicalSubstance5-Disease3-associated_with_risk_for: - inputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: NCIT semantic: Disease @@ -1587,7 +1587,7 @@ components: ChemicalSubstance5-Disease3-negatively_associated_with_risk_for: - inputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: NCIT semantic: Disease @@ -1605,7 +1605,7 @@ components: ChemicalSubstance5-Disease3-negatively_correlated_with: - inputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: NCIT semantic: Disease @@ -1623,7 +1623,7 @@ components: ChemicalSubstance5-Disease3-related_to: - inputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: NCIT semantic: Disease @@ -1641,7 +1641,7 @@ components: ChemicalSubstance5-Disease4-associated_with_risk_for: - inputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: SNOMEDCT semantic: Disease @@ -1659,7 +1659,7 @@ components: ChemicalSubstance5-Disease4-negatively_associated_with_risk_for: - inputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: SNOMEDCT semantic: Disease @@ -1677,7 +1677,7 @@ components: ChemicalSubstance5-Disease4-negatively_correlated_with: - inputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: SNOMEDCT semantic: Disease @@ -1695,7 +1695,7 @@ components: ChemicalSubstance5-Disease4-related_to: - inputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: SNOMEDCT semantic: Disease @@ -1713,7 +1713,7 @@ components: ChemicalSubstance5-PhenotypicFeature1-associated_with_risk_for: - inputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: HP semantic: PhenotypicFeature @@ -1731,7 +1731,7 @@ components: ChemicalSubstance5-PhenotypicFeature1-negatively_associated_with_risk_for: - inputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: HP semantic: PhenotypicFeature @@ -1749,7 +1749,7 @@ components: ChemicalSubstance5-PhenotypicFeature1-negatively_correlated_with: - inputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: HP semantic: PhenotypicFeature @@ -1767,7 +1767,7 @@ components: ChemicalSubstance5-PhenotypicFeature1-related_to: - inputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: HP semantic: PhenotypicFeature @@ -1785,7 +1785,7 @@ components: ChemicalSubstance5-PhenotypicFeature3-associated_with_risk_for: - inputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: NCIT semantic: PhenotypicFeature @@ -1803,7 +1803,7 @@ components: ChemicalSubstance5-PhenotypicFeature3-negatively_associated_with_risk_for: - inputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: NCIT semantic: PhenotypicFeature @@ -1821,7 +1821,7 @@ components: ChemicalSubstance5-PhenotypicFeature3-negatively_correlated_with: - inputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: NCIT semantic: PhenotypicFeature @@ -1839,7 +1839,7 @@ components: ChemicalSubstance5-PhenotypicFeature3-related_to: - inputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: NCIT semantic: PhenotypicFeature @@ -1857,7 +1857,7 @@ components: ChemicalSubstance5-PhenotypicFeature4-associated_with_risk_for: - inputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: SNOMEDCT semantic: PhenotypicFeature @@ -1875,7 +1875,7 @@ components: ChemicalSubstance5-PhenotypicFeature4-negatively_associated_with_risk_for: - inputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: SNOMEDCT semantic: PhenotypicFeature @@ -1893,7 +1893,7 @@ components: ChemicalSubstance5-PhenotypicFeature4-negatively_correlated_with: - inputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: SNOMEDCT semantic: PhenotypicFeature @@ -1911,7 +1911,7 @@ components: ChemicalSubstance5-PhenotypicFeature4-related_to: - inputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: SNOMEDCT semantic: PhenotypicFeature @@ -1929,7 +1929,7 @@ components: ChemicalSubstance5-Procedure3-associated_with_risk_for: - inputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: NCIT semantic: Procedure @@ -1947,7 +1947,7 @@ components: ChemicalSubstance5-Procedure3-negatively_associated_with_risk_for: - inputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: NCIT semantic: Procedure @@ -1965,7 +1965,7 @@ components: ChemicalSubstance5-Procedure3-negatively_correlated_with: - inputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: NCIT semantic: Procedure @@ -1983,7 +1983,7 @@ components: ChemicalSubstance5-Procedure3-related_to: - inputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule outputs: - id: NCIT semantic: Procedure @@ -2004,7 +2004,7 @@ components: semantic: Disease outputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:associated_with_risk_for @@ -2022,7 +2022,7 @@ components: semantic: Disease outputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:negatively_associated_with_risk_for @@ -2040,7 +2040,7 @@ components: semantic: Disease outputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:negatively_correlated_with @@ -2058,7 +2058,7 @@ components: semantic: Disease outputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:related_to @@ -2076,7 +2076,7 @@ components: semantic: Disease outputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:associated_with_risk_for @@ -2094,7 +2094,7 @@ components: semantic: Disease outputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:negatively_associated_with_risk_for @@ -2112,7 +2112,7 @@ components: semantic: Disease outputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:negatively_correlated_with @@ -2130,7 +2130,7 @@ components: semantic: Disease outputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:related_to @@ -2652,7 +2652,7 @@ components: semantic: Disease outputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:associated_with_risk_for @@ -2670,7 +2670,7 @@ components: semantic: Disease outputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:negatively_associated_with_risk_for @@ -2688,7 +2688,7 @@ components: semantic: Disease outputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:negatively_correlated_with @@ -2706,7 +2706,7 @@ components: semantic: Disease outputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:related_to @@ -2724,7 +2724,7 @@ components: semantic: Disease outputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:associated_with_risk_for @@ -2742,7 +2742,7 @@ components: semantic: Disease outputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:negatively_associated_with_risk_for @@ -2760,7 +2760,7 @@ components: semantic: Disease outputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:negatively_correlated_with @@ -2778,7 +2778,7 @@ components: semantic: Disease outputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:related_to @@ -3300,7 +3300,7 @@ components: semantic: Disease outputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:associated_with_risk_for @@ -3318,7 +3318,7 @@ components: semantic: Disease outputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:negatively_associated_with_risk_for @@ -3336,7 +3336,7 @@ components: semantic: Disease outputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:negatively_correlated_with @@ -3354,7 +3354,7 @@ components: semantic: Disease outputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:related_to @@ -3372,7 +3372,7 @@ components: semantic: Disease outputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:associated_with_risk_for @@ -3390,7 +3390,7 @@ components: semantic: Disease outputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:negatively_associated_with_risk_for @@ -3408,7 +3408,7 @@ components: semantic: Disease outputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:negatively_correlated_with @@ -3426,7 +3426,7 @@ components: semantic: Disease outputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:related_to @@ -3948,7 +3948,7 @@ components: semantic: PhenotypicFeature outputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:associated_with_risk_for @@ -3966,7 +3966,7 @@ components: semantic: PhenotypicFeature outputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:negatively_associated_with_risk_for @@ -3984,7 +3984,7 @@ components: semantic: PhenotypicFeature outputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:negatively_correlated_with @@ -4002,7 +4002,7 @@ components: semantic: PhenotypicFeature outputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:related_to @@ -4020,7 +4020,7 @@ components: semantic: PhenotypicFeature outputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:associated_with_risk_for @@ -4038,7 +4038,7 @@ components: semantic: PhenotypicFeature outputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:negatively_associated_with_risk_for @@ -4056,7 +4056,7 @@ components: semantic: PhenotypicFeature outputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:negatively_correlated_with @@ -4074,7 +4074,7 @@ components: semantic: PhenotypicFeature outputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:related_to @@ -4596,7 +4596,7 @@ components: semantic: PhenotypicFeature outputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:associated_with_risk_for @@ -4614,7 +4614,7 @@ components: semantic: PhenotypicFeature outputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:negatively_associated_with_risk_for @@ -4632,7 +4632,7 @@ components: semantic: PhenotypicFeature outputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:negatively_correlated_with @@ -4650,7 +4650,7 @@ components: semantic: PhenotypicFeature outputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:related_to @@ -4668,7 +4668,7 @@ components: semantic: PhenotypicFeature outputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:associated_with_risk_for @@ -4686,7 +4686,7 @@ components: semantic: PhenotypicFeature outputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:negatively_associated_with_risk_for @@ -4704,7 +4704,7 @@ components: semantic: PhenotypicFeature outputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:negatively_correlated_with @@ -4722,7 +4722,7 @@ components: semantic: PhenotypicFeature outputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:related_to @@ -5244,7 +5244,7 @@ components: semantic: PhenotypicFeature outputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:associated_with_risk_for @@ -5262,7 +5262,7 @@ components: semantic: PhenotypicFeature outputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:negatively_associated_with_risk_for @@ -5280,7 +5280,7 @@ components: semantic: PhenotypicFeature outputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:negatively_correlated_with @@ -5298,7 +5298,7 @@ components: semantic: PhenotypicFeature outputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:related_to @@ -5316,7 +5316,7 @@ components: semantic: PhenotypicFeature outputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:associated_with_risk_for @@ -5334,7 +5334,7 @@ components: semantic: PhenotypicFeature outputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:negatively_associated_with_risk_for @@ -5352,7 +5352,7 @@ components: semantic: PhenotypicFeature outputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:negatively_correlated_with @@ -5370,7 +5370,7 @@ components: semantic: PhenotypicFeature outputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:related_to @@ -5892,7 +5892,7 @@ components: semantic: Procedure outputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:associated_with_risk_for @@ -5910,7 +5910,7 @@ components: semantic: Procedure outputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:negatively_associated_with_risk_for @@ -5928,7 +5928,7 @@ components: semantic: Procedure outputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:negatively_correlated_with @@ -5946,7 +5946,7 @@ components: semantic: Procedure outputs: - id: CHEBI - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:related_to @@ -5964,7 +5964,7 @@ components: semantic: Procedure outputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:associated_with_risk_for @@ -5982,7 +5982,7 @@ components: semantic: Procedure outputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:negatively_associated_with_risk_for @@ -6000,7 +6000,7 @@ components: semantic: Procedure outputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:negatively_correlated_with @@ -6018,7 +6018,7 @@ components: semantic: Procedure outputs: - id: UNII - semantic: ChemicalSubstance + semantic: SmallMolecule parameters: fields: subject,predicate q: object.id:"{inputs[0]}" AND subject.type:ChemicalSubstance AND predicate.type:related_to From 286256d9395e395483a81f94708cceae2ca273fc Mon Sep 17 00:00:00 2001 From: Colleen Xu Date: Mon, 26 Jul 2021 23:17:32 -0700 Subject: [PATCH 2/2] add x-translator.biolink-version --- ehr_risk_kp.yaml | 1 + 1 file changed, 1 insertion(+) diff --git a/ehr_risk_kp.yaml b/ehr_risk_kp.yaml index 452a1ca..2a4fd12 100644 --- a/ehr_risk_kp.yaml +++ b/ehr_risk_kp.yaml @@ -14,6 +14,7 @@ info: team: - Multiomics Provider - Service Provider + biolink-version: "2.1.0" servers: - description: Encrypted Production server url: https://biothings.ncats.io/clinical_risk_kp