From 735ff47bbac9a8a8094a6f215f82c5915426a27c Mon Sep 17 00:00:00 2001 From: Wout Bittremieux Date: Fri, 15 Nov 2024 20:58:41 +0100 Subject: [PATCH] Add meeting notes November 15 --- meeting_notes/2024/20241115_telco.md | 35 ++++++++++++++++++++++++++++ 1 file changed, 35 insertions(+) create mode 100644 meeting_notes/2024/20241115_telco.md diff --git a/meeting_notes/2024/20241115_telco.md b/meeting_notes/2024/20241115_telco.md new file mode 100644 index 0000000..5b547ff --- /dev/null +++ b/meeting_notes/2024/20241115_telco.md @@ -0,0 +1,35 @@ +# QC working group teleconference 15 November 2024 + +- Wout Bittremieux +- Nils Hoffmann +- Julian Uszkoreit +- Mathias Walzer + +--- + +## In-person mzQC meeting + +- **January 15–17, 2025** has been selected for the in-person meeting in Antwerp, Belgium. +- Wout will send around an invitation and travel information for people planning to join in-person. + +## PSI Spring Meeting 2025 + +- The [PSI Spring Meeting](https://www.psidev.info/spring-meeting-2025) will take place on March 31–April 3, 2025 in Tübingen, Germany. +- The first two days will be a workshop on making proteomics data AI-ready. +- The last two days will feature regular PSI sessions. +- Registration (free) is open until early February. + +## pymzqc validator + +- Mathias presented some bug fixes to address several open issues for the validator. + - We discussed uniqueness of input file names and that this refers to a `runQuality`/`setQuality` scope rather than an entire mzQC file. + - We should start an addendum file with such information to complement the specification document. +- Mathias and Nils will look into setting up a system to automatically deploy new releases of the validator to the website. + +## mzQC use case + +- Wout had a meeting with Theodore Alexandrov, Chris Anderton, and Kumar Sharma on the NIH-funded Kidney Precision Medicine Project (KPMP). + - They have developed QC methods for MS imaging, including m/z calibration, stability, and batch comparison. + - Wout has sent technical information on mzQC, they will now take a stab at an initial implementation of mzQC export from their tools. +- Nils discussed QC for clinical lipidomics using [MRMkit](https://github.com/MRMkit/MRMkit) with colleagues in Singapore. + - They have [rich clinical lipidomics data](https://github.com/SLINGhub/sling-data-workshop-2024) with plenty of metrics and are interested in supporting mzQC.