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glycresoft_terms.txt
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glycresoft_terms.txt
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[Term]
name: GlycReSoft:total score
id: MS:XXX10A
def: "A spectrum match score from a combination of peptide and glycan evidence" [PSI:PI]
xref: value-type:xsd\:double "The allowed value-type for this CV term."
is_a: MS:1001143 ! PSM-level search engine specific statistic
is_a: MS:1001153 ! search engine specific score
is_a: MS:XXX104 ! glycopeptide score
relationship: has_order MS:1002108 ! higher score better
[Term]
name: GlycReSoft:glycan score
id: MS:XXX10B
def: "A spectrum match score from glycan evidence" [PSI:PI]
xref: value-type:xsd\:double "The allowed value-type for this CV term."
is_a: MS:1001143 ! PSM-level search engine specific statistic
is_a: MS:1001153 ! search engine specific score
is_a: MS:XXX103 ! glycopeptide glycan score
relationship: has_order MS:1002108 ! higher score better
[Term]
name: GlycReSoft:peptide score
id: MS:XXX10C
def: "A spectrum match score from peptide sequence evidence" [PSI:PI]
xref: value-type:xsd\:double "The allowed value-type for this CV term."
is_a: MS:1001143 ! PSM-level search engine specific statistic
is_a: MS:1001153 ! search engine specific score
is_a: MS:XXX102 ! glycopeptide peptide score
relationship: has_order MS:1002108 ! higher score better
[Term]
name: GlycReSoft:total q-value
id: MS:XXX10D
def: "A q-value statistic calculated from GlycReSoft:total score" [PSI:PI]
is_a: MS:1002354 ! PSM-level q-value
is_a: MS:1001143 ! PSM-level search engine specific statistic
is_a: MS:XXX117 ! glycopeptide statistic
[Term]
name: GlycReSoft:peptide q-value
id: MS:XXX10E
def: "A q-value statistic calculated from GlycReSoft:peptide score" [PSI:PI]
is_a: MS:1002354 ! PSM-level q-value
is_a: MS:1001143 ! PSM-level search engine specific statistic
is_a: MS:XXX116 ! peptide-specific statistic
[Term]
name: GlycReSoft:glycan q-value
id: MS:XXX10F
def: "A q-value statistic calculated from GlycReSoft:glycan score" [PSI:PI]
is_a: MS:1002354 ! PSM-level q-value
is_a: MS:1001143 ! PSM-level search engine specific statistic
is_a: MS:XXX115 ! glycan-specific statistic
[Term]
name: GlycReSoft:joint q-value
id: MS:XXX10G
def: "A q-value statistic calculated from a combination of GlycReSoft:peptide score, GlycReSoft:glycan score, and GlycReSoft:total score" [PSI:PI]
is_a: MS:1002354 ! PSM-level q-value
is_a: MS:1001143 ! PSM-level search engine specific statistic
is_a: MS:XXX118 ! joint glycopeptide statistic
[Term]
name: GlycReSoft:glycan coverage
id: MS:XXX10H
def: "The degree of glycan sequence or composition coverage estimated by GlycReSoft" [PSI:PI]
xref: value-type:xsd\:double "The allowed value-type for this CV term."
is_a: MS:1001143 ! PSM-level search engine specific statistic
is_a: MS:1001153 ! search engine specific score
is_a: MS:XXX103 ! glycopeptide glycan score
relationship: has_order MS:1002108 ! higher score better
relationship: has_domain MS:1002305 ! value between 0 and 1 inclusive
[Term]
name: GlycReSoft:mass shift
id: MS:XXX10I
def: "A mass shift applied to the glycopeptide when matching to the precursor ion mass that reflects an unlocalized modification or adduct" [PSI:PI]
is_a: MS:1001405 ! spectrum identification result details