High Performance Computing in Biology
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- University of Illinois at Urbana-Champaign
- http://www.hpcbio.illinois.edu
Popular repositories Loading
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16S-rDNA-dada2-pipeline
16S-rDNA-dada2-pipeline Public**DEFUNCT** dada2-based Nextflow pipeline for multiple amplicon data. See website for up-to-date version
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In-depth-NGS-Data-Analysis-Course
In-depth-NGS-Data-Analysis-Course PublicForked from hbctraining/In-depth-NGS-Data-Analysis-Course
Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.
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eib-marker-design
eib-marker-design PublicWorkflow for designing KASP markers from resequencing data
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EMIRGE
EMIRGE PublicForked from csmiller/EMIRGE
EMIRGE reconstructs full length ribosomal genes from short read sequencing data.
Python 1
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R-genomics
R-genomics PublicForked from datacarpentry/R-genomics
Lesson on data analysis and visualization in R for genomics
HTML 1
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Data-Management
Data-Management PublicData Carpentry data management course, combining CSE and HPCBio materials
Repositories
- figaro Public Forked from Zymo-Research/figaro
An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters
HPCBio/figaro’s past year of commit activity - configs Public Forked from nf-core/configs
Config files used to define parameters specific to compute environments at different Institutions
HPCBio/configs’s past year of commit activity - Mayo-Genome-Assembly Public
HPCBio/Mayo-Genome-Assembly’s past year of commit activity - Refgraph_pipeline Public Forked from h3abionet/HPCBio-Refgraph_pipeline
H3ABioNet RefGraph assembly-based pipeline
HPCBio/Refgraph_pipeline’s past year of commit activity - dotPlotly Public Forked from tpoorten/dotPlotly
Generate an interactive dot plot from mummer or minimap alignments
HPCBio/dotPlotly’s past year of commit activity - workflows-nextflow Public Forked from carpentries-incubator/workflows-nextflow
Workflow management with Nextflow and nf-core
HPCBio/workflows-nextflow’s past year of commit activity