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fortranlib_test test aborts on Fedora Rawhide i686 #4926

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opoplawski opened this issue Oct 4, 2024 · 0 comments
Open

fortranlib_test test aborts on Fedora Rawhide i686 #4926

opoplawski opened this issue Oct 4, 2024 · 0 comments
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Component - Fortran Fortran wrappers Component - Testing Code in test or testpar directories, GitHub workflows Priority - 3. Low 🔽 Code cleanup, small feature change requests, etc. Type - Bug Please report security issues to [email protected] instead of creating an issue on GitHub

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@opoplawski
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Describe the bug

============================
Fortran API: Testing fortranlib_test
============================
Fortran API: Test log for fortranlib_test
============================
corrupted size vs. prev_size

Program received signal SIGABRT: Process abort signal.

Backtrace for this error:
#0  0xf77eb1cd in ???
#1  0xf77ea27d in ???
#2  0xf7fa959f in ???
#3  0xf7fa9589 in ???
#4  0xf758415e in ???
#5  0xf752a5a0 in ???
#6  0xf7511e93 in ???
#7  0xf7512ed9 in ???
#8  0xf758f1ec in ???
#9  0xf758fd31 in ???
#10  0xf75931c7 in ???
#11  0xf75940f5 in ???
#12  0xf7c2d247 in H5MM_realloc
        at ../../src/H5MM.c:87
#13  0xf7be5157 in H5G__visit_cb
        at ../../src/H5Gint.c:944
#14  0xf7be97b5 in H5G__node_iterate
        at ../../src/H5Gnode.c:937
#15  0xf7afe9be in H5B__iterate_helper
        at ../../src/H5B.c:1086
#16  0xf7afeb6c in H5B_iterate
        at ../../src/H5B.c:1125
#17  0xf7bee234 in H5G__stab_iterate
        at ../../src/H5Gstab.c:504
#18  0xf7bef0c9 in H5G__obj_iterate
        at ../../src/H5Gobj.c:664
#19  0xf7be5476 in H5G__visit_cb
        at ../../src/H5Gint.c:1043
#20  0xf7be97b5 in H5G__node_iterate
        at ../../src/H5Gnode.c:937
#21  0xf7afe9be in H5B__iterate_helper
        at ../../src/H5B.c:1086
#22  0xf7afeb6c in H5B_iterate
        at ../../src/H5B.c:1125
#23  0xf7bee234 in H5G__stab_iterate
        at ../../src/H5Gstab.c:504
#24  0xf7bef0c9 in H5G__obj_iterate
        at ../../src/H5Gobj.c:664
#25  0xf7bef43d in H5G_visit
        at ../../src/H5Gint.c:1180
#26  0xf7bef86b in H5G_get_name_by_addr
        at ../../src/H5Gname.c:1133
#27  0xf7d883a5 in H5VL__native_object_get
        at ../../src/H5VLnative_object.c:223
#28  0xf7da947e in H5VL__object_get.isra.0
        at ../../src/H5VLcallback.c:5753
#29  0xf7d7a28b in H5VL_object_get
        at ../../src/H5VLcallback.c:5785
#30  0xf7ca7d92 in H5Rget_obj_name
        at ../../src/H5R.c:1128
#31  0xf7f5005d in __h5r_MOD_h5rget_obj_name_f
        at ../../../fortran/src/H5Rff.F90:1136
#32  0x565753d9 in ???
#33  0x565727c2 in ???
#34  0x5656443e in ???
#35  0xf7513e42 in ???
#36  0xf7513f07 in ???
#37  0x56564476 in ???
#38  0xffffffff in ???
Command terminated by signal 6

Platform (please complete the following information)

  • HDF5 version - 1.14.5
  • OS and version - Fedora Rawhide i686
  • Compiler and version - gcc/gfortran 14.2.1
  • Build system - autotools
  • Any configure options you specified
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules '
+ ../configure --build=i686-redhat-linux-gnu --host=i686-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib --libexecdir=/usr/libexec --localstatedir=/var --runstatedir=/run --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --disable-silent-rules --enable-fortran --enable-hl --enable-shared --with-szlib --enable-cxx --with-default-plugindir=/usr/lib/hdf5/plugin
@vchoi-hdfgroup vchoi-hdfgroup added Component - Fortran Fortran wrappers Component - Testing Code in test or testpar directories, GitHub workflows Branch - 1.14 labels Oct 4, 2024
@derobins derobins added Priority - 2. Medium ⏹ It would be nice to have this in the next release Type - Bug Please report security issues to [email protected] instead of creating an issue on GitHub labels Oct 4, 2024
@mattjala mattjala added Priority - 3. Low 🔽 Code cleanup, small feature change requests, etc. and removed Priority - 2. Medium ⏹ It would be nice to have this in the next release labels Oct 15, 2024
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Labels
Component - Fortran Fortran wrappers Component - Testing Code in test or testpar directories, GitHub workflows Priority - 3. Low 🔽 Code cleanup, small feature change requests, etc. Type - Bug Please report security issues to [email protected] instead of creating an issue on GitHub
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