diff --git a/Dockerfile b/Dockerfile index bc9f191..7e9da7c 100644 --- a/Dockerfile +++ b/Dockerfile @@ -105,4 +105,4 @@ RUN mkdir /opt/MethylDackel && \ rm /opt/MethylDackel/MethylDackel.zip # Install MultiQC -RUN pip install git+https://github.com/ewels/MultiQC.git +RUN pip install multiqc diff --git a/bismark.nf b/bismark.nf index caf1116..d7c6d89 100644 --- a/bismark.nf +++ b/bismark.nf @@ -522,7 +522,7 @@ process multiqc { file ('bismark/*') from bismark_reports_results.collect() file ('bismark/*') from bismark_summary_results.collect() file ('qualimap/*') from qualimap_results.collect() - file ('software_versions/*') from software_versions_yaml + file ('software_versions/*') from software_versions_yaml.collect() output: file "*_report.html" into multiqc_report