diff --git a/conf/aws.config b/conf/aws.config index 1c2950a..3e5fd86 100644 --- a/conf/aws.config +++ b/conf/aws.config @@ -67,7 +67,7 @@ process { params { saveReference = true - // illumina iGenomes reference file paths on UPPMAX + // illumina iGenomes reference file paths on AWS genomes { 'GRCh37' { bismark = 's3://ngi-igenomes/igenomes/Homo_sapiens/Ensembl/GRCh37/Sequence/BismarkIndex' diff --git a/docs/installation.md b/docs/installation.md index d21ed56..c4a3803 100644 --- a/docs/installation.md +++ b/docs/installation.md @@ -94,7 +94,7 @@ A reference genome path can be specified on the command line each time you run w params { genomes { 'YOUR-ID' { - bismar = '/BismarkIndex' + bismark = '/BismarkIndex' fasta = '/genome.fa' } 'OTHER-GENOME' {