doc/sv-gen.svg

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<!-- Title: snakemake_dag Pages: 1 -->
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<!-- 1 -->
<g id="node2" class="node">
<title>1</title>
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<!-- 1&#45;&gt;0 -->
<g id="edge1" class="edge">
<title>1&#45;&gt;0</title>
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<!-- 2 -->
<g id="node3" class="node">
<title>2</title>
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<!-- 2&#45;&gt;0 -->
<g id="edge2" class="edge">
<title>2&#45;&gt;0</title>
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<!-- 3 -->
<g id="node4" class="node">
<title>3</title>
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<text text-anchor="middle" x="271" y="-87.5" font-family="sans" font-size="10.00" fill="#000000">samtools_index</text>
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<!-- 3&#45;&gt;0 -->
<g id="edge3" class="edge">
<title>3&#45;&gt;0</title>
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<!-- 4 -->
<g id="node5" class="node">
<title>4</title>
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<text text-anchor="middle" x="533" y="-93" font-family="sans" font-size="10.00" fill="#000000">samtools_index</text>
<text text-anchor="middle" x="533" y="-82" font-family="sans" font-size="10.00" fill="#000000">cov: 30</text>
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<!-- 4&#45;&gt;0 -->
<g id="edge4" class="edge">
<title>4&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M485.9482,-74.8697C482.9202,-73.898 479.9175,-72.935 477,-72 431.4818,-57.4125 379.0485,-40.6678 344.8094,-29.7415"/>
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<!-- 5 -->
<g id="node6" class="node">
<title>5</title>
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<text text-anchor="middle" x="47" y="-82" font-family="sans" font-size="10.00" fill="#000000">cov: 30</text>
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<!-- 5&#45;&gt;0 -->
<g id="edge5" class="edge">
<title>5&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M94.3017,-74.5999C97.2401,-73.704 100.1574,-72.8306 103,-72 161.2953,-54.9664 229.6145,-37.4553 270.8134,-27.1597"/>
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<!-- 6 -->
<g id="node7" class="node">
<title>6</title>
<path fill="none" stroke="#56d8a9" stroke-width="2" d="M382,-180C382,-180 312,-180 312,-180 306,-180 300,-174 300,-168 300,-168 300,-156 300,-156 300,-150 306,-144 312,-144 312,-144 382,-144 382,-144 388,-144 394,-150 394,-156 394,-156 394,-168 394,-168 394,-174 388,-180 382,-180"/>
<text text-anchor="middle" x="347" y="-165" font-family="sans" font-size="10.00" fill="#000000">samtools_index</text>
<text text-anchor="middle" x="347" y="-154" font-family="sans" font-size="10.00" fill="#000000">cov: 30</text>
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<!-- 6&#45;&gt;0 -->
<g id="edge6" class="edge">
<title>6&#45;&gt;0</title>
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<!-- 7 -->
<g id="node8" class="node">
<title>7</title>
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<text text-anchor="middle" x="457" y="-165" font-family="sans" font-size="10.00" fill="#000000">samtools_view</text>
<text text-anchor="middle" x="457" y="-154" font-family="sans" font-size="10.00" fill="#000000">cov: 10</text>
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<!-- 7&#45;&gt;1 -->
<g id="edge7" class="edge">
<title>7&#45;&gt;1</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M447.9157,-143.8314C443.9385,-135.8771 439.1845,-126.369 434.7861,-117.5723"/>
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<!-- 8 -->
<g id="node9" class="node">
<title>8</title>
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<text text-anchor="middle" x="129" y="-165" font-family="sans" font-size="10.00" fill="#000000">samtools_view</text>
<text text-anchor="middle" x="129" y="-154" font-family="sans" font-size="10.00" fill="#000000">cov: 10</text>
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<!-- 8&#45;&gt;2 -->
<g id="edge8" class="edge">
<title>8&#45;&gt;2</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M136.5703,-143.8314C139.8493,-135.9617 143.762,-126.5712 147.3945,-117.8533"/>
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<!-- 9 -->
<g id="node10" class="node">
<title>9</title>
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<text text-anchor="middle" x="237" y="-165" font-family="sans" font-size="10.00" fill="#000000">samtools_view</text>
<text text-anchor="middle" x="237" y="-154" font-family="sans" font-size="10.00" fill="#000000">cov: 10</text>
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<!-- 9&#45;&gt;3 -->
<g id="edge9" class="edge">
<title>9&#45;&gt;3</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M245.5796,-143.8314C249.3358,-135.8771 253.8257,-126.369 257.9798,-117.5723"/>
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<!-- 10 -->
<g id="node11" class="node">
<title>10</title>
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<text text-anchor="middle" x="457" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">bwa_mem</text>
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<!-- 10&#45;&gt;4 -->
<g id="edge10" class="edge">
<title>10&#45;&gt;4</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M480.1951,-215.9705C491.0502,-206.3848 503.2625,-193.7497 511,-180 521.6826,-161.0167 527.2195,-136.9325 530.0654,-118.4562"/>
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<!-- 10&#45;&gt;7 -->
<g id="edge13" class="edge">
<title>10&#45;&gt;7</title>
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<!-- 11 -->
<g id="node12" class="node">
<title>11</title>
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<text text-anchor="middle" x="129" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">bwa_mem</text>
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<!-- 11&#45;&gt;5 -->
<g id="edge11" class="edge">
<title>11&#45;&gt;5</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M106.1672,-215.7592C95.4011,-206.1216 83.1591,-193.5038 75,-180 63.4866,-160.9446 56.3024,-136.7229 52.0978,-118.2085"/>
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<!-- 11&#45;&gt;8 -->
<g id="edge14" class="edge">
<title>11&#45;&gt;8</title>
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<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="132.5001,-190.4132 129,-180.4133 125.5001,-190.4133 132.5001,-190.4132"/>
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<!-- 12 -->
<g id="node13" class="node">
<title>12</title>
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<text text-anchor="middle" x="287" y="-231.5" font-family="sans" font-size="10.00" fill="#000000">bwa_mem</text>
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<!-- 12&#45;&gt;6 -->
<g id="edge12" class="edge">
<title>12&#45;&gt;6</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M302.1405,-215.8314C309.1217,-207.454 317.5391,-197.3531 325.1876,-188.1749"/>
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<!-- 12&#45;&gt;9 -->
<g id="edge15" class="edge">
<title>12&#45;&gt;9</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M274.3829,-215.8314C268.6828,-207.6232 261.8337,-197.7606 255.5641,-188.7323"/>
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<!-- 13 -->
<g id="node14" class="node">
<title>13</title>
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<text text-anchor="middle" x="269" y="-463.5" font-family="sans" font-size="10.00" fill="#000000">samtools_faidx</text>
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<!-- 13&#45;&gt;10 -->
<g id="edge16" class="edge">
<title>13&#45;&gt;10</title>
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<!-- 13&#45;&gt;11 -->
<g id="edge19" class="edge">
<title>13&#45;&gt;11</title>
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<!-- 13&#45;&gt;12 -->
<g id="edge22" class="edge">
<title>13&#45;&gt;12</title>
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<!-- 14 -->
<g id="node15" class="node">
<title>14</title>
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<!-- 13&#45;&gt;14 -->
<g id="edge25" class="edge">
<title>13&#45;&gt;14</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M239.3059,-447.9172C227.2164,-438.8022 214.5621,-426.5731 208,-412 201.4306,-397.4108 201.0018,-390.3884 208,-376 212.8275,-366.0747 232.2031,-350.8019 250.556,-337.8986"/>
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<!-- 18 -->
<g id="node19" class="node">
<title>18</title>
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<text text-anchor="middle" x="539" y="-397" font-family="sans" font-size="10.00" fill="#000000">survivor_simsv</text>
<text text-anchor="middle" x="539" y="-386" font-family="sans" font-size="10.00" fill="#000000">genotype: hmz</text>
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<!-- 13&#45;&gt;18 -->
<g id="edge30" class="edge">
<title>13&#45;&gt;18</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M315.3854,-455.3443C356.9654,-445.5695 419.8116,-430.2475 483.6253,-412.009"/>
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<!-- 19 -->
<g id="node20" class="node">
<title>19</title>
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<text text-anchor="middle" x="269" y="-386" font-family="sans" font-size="10.00" fill="#000000">genotype: hmz&#45;sv</text>
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<!-- 13&#45;&gt;19 -->
<g id="edge32" class="edge">
<title>13&#45;&gt;19</title>
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<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="272.5001,-422.4132 269,-412.4133 265.5001,-422.4133 272.5001,-422.4132"/>
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<!-- 20 -->
<g id="node21" class="node">
<title>20</title>
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<!-- 13&#45;&gt;20 -->
<g id="edge34" class="edge">
<title>13&#45;&gt;20</title>
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<!-- 14&#45;&gt;10 -->
<g id="edge17" class="edge">
<title>14&#45;&gt;10</title>
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<title>14&#45;&gt;11</title>
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<title>14&#45;&gt;12</title>
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<!-- 15 -->
<g id="node16" class="node">
<title>15</title>
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<!-- 15&#45;&gt;10 -->
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<title>15&#45;&gt;10</title>
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<!-- 16 -->
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<title>16</title>
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<title>16&#45;&gt;11</title>
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<!-- 17 -->
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<title>17</title>
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<title>17&#45;&gt;12</title>
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<!-- 21 -->
<g id="node22" class="node">
<title>21</title>
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<!-- 21&#45;&gt;18 -->
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<title>21&#45;&gt;18</title>
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<!-- 21&#45;&gt;19 -->
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<!-- 21&#45;&gt;20 -->
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