This site lists some examples how the SG-NEx data resource is used in research:
- Wang, Yunhao, et al. "Nanopore sequencing technology, bioinformatics and applications." Nature Biotechnology (2021): 1-18. https://doi.org/10.1038/s41587-021-01108-x
- Wan, Yuk Kei, et al. "Beyond sequencing: machine learning algorithms extract biology hidden in Nanopore signal data." Trends in Genetics (2021). https://doi.org/10.1016/j.tig.2021.09.001
- De Paoli-Iseppi, Ricardo, Josie Gleeson, and Michael B. Clark. "Isoform age-splice isoform profiling using long-read technologies." Frontiers in Molecular Biosciences 8 (2021). https://doi.org/10.3389/fmolb.2021.711733
- Schulz, Laura, et al. "Direct long-read RNA sequencing identifies a subset of questionable exitrons likely arising from reverse transcription artifacts." Genome Biology 22.1 (2021): 1-12. https://doi.org/10.1186/s13059-021-02411-1
- Annaldasula, Siddharth, Martyna Gajos, and Andreas Mayer. "IsoTV: processing and visualizing functional features of translated transcript isoforms." Bioinformatics (2021). https://doi.org/10.1093/bioinformatics/btab103
- Pratanwanich, Ploy N., et al. "Identification of differential RNA modifications from nanopore direct RNA sequencing with xPore." Nature Biotechnology (2021): 1-9. https://doi.org/10.1038/s41587-021-00949-w
- Hendra, Christopher, et al. "Detection of m6A from direct RNA sequencing using a Multiple Instance Learning framework." bioRxiv (2021). https://doi.org/10.1101/2021.09.20.461055
- Campos, João H., et al. "Direct RNA sequencing reveals SARS-CoV-2 m6A sites and possible differential DRACH motif methylation among variants." bioRxiv (2021). https://doi.org/10.1101/2021.08.24.457397
- Davidson, Nadia M., et al. "JAFFAL: Detecting fusion genes with long read transcriptome sequencing." bioRxiv (2021). https://doi.org/10.1101/2021.04.26.441398
Please feel free to add more examples by creating a pull request.