m6Anet giving output with NaNs in the table

[baibhav-bioinfo]

Hi,

I am working on finding out the differential m6A modification in between control and drought samples with 3 repllicates.
I have used genome.fa in alignment and also in eventalign using nanopolish.

then i used eventlaign.txt as input in m6Anet.
the output i got from m6anet "inference" is containing "NaN" in the probability column.

why is that??
did i did a mistake by not using transcript.fasta rather than genome.fasta.

[yuukiiwa]

Hi @baibhav-bioinfo,

m6anet supports cDNA transcript.fa not genome.fa, so by changing to transcript.fa, it should fix it.

Thanks!

Best wishes,
Yuk Kei