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m6anet-inference error #121
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hi @XichenZhao0223, at a glance, this seems to me that the error is caused by a mismatch of datatype between transcript_id in data.info and in data.json. I am suspecting that your transcript_id is not stored as string in data.info but is stored as string in data.json. An easy fix to this issue is to convert the transcript_id column in data.info manually to string. Alternatively, can you please send one of the data.info and data.json pair files for me to verify this? Thanks! |
Dear developer, Thank you for your patient reply. I have tried to convert the trans_id in data.info into characters in R language, but unfortunately, the error still exists. |
HI, @XichenZhao0223 @chrishendra93 I think I am having similar error. Is the problem solved? Many thanks! Andrea
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Dear Andrea, Regards, |
hi, @XichenZhao0223 thanks for quick reply. My reference is from gencode. I will switch to ESEMBEL and let you know the result. your info is very appreciated! Andrea
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Hi, @XichenZhao0223, I got it done with ENSEMBL reference! Thank you again for your suggestion and experience!!!!!!! Andrea
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Hi Andrea, You're welcome, and congratulations !! 😃 Regards, |
Dear developers,
Thank you for developing this tool. I have encountered two errors when running the inference step for two data.
The version I use is 2.0.2.
I have run the codes as follows for these two data:
The data preparation fold has 4 files:
data.info
data.json
data.log
eventalign.index
For the first error:
Error message:
The preview of
data.info
:The preview of
data.json
:For the second error:
Error message:
The preview of
data.info
:The preview of
data.json
:Could you please help me with these two issues?
Thank you for your time, and I look forward to hearing from you.
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