diff --git a/tests/testthat/test_bambu.R b/tests/testthat/test_bambu.R index 13289661..1147709b 100644 --- a/tests/testthat/test_bambu.R +++ b/tests/testthat/test_bambu.R @@ -147,12 +147,12 @@ test_that("bambu (isoform quantification of saved readClassFiles) produces expec # test case 1: bambu with single bam file, only using annotations (default option) set.seed(1234) - se = bambu(readClass.file = seReadClass1, annotations = gr, extendAnnotations = FALSE) + se = bambu(readClass.file = seReadClass1, annotations = gr,emParameters=list(bias = FALSE), extendAnnotations = FALSE) expect_s4_class(se, "SummarizedExperiment") expect_equal(se,seExpected) set.seed(1234) - seExtended = bambu(readClass.file = seReadClass1, annotations = gr, extendAnnotations = TRUE) + seExtended = bambu(readClass.file = seReadClass1, annotations = gr,emParameters=list(bias = FALSE), extendAnnotations = TRUE) expect_s4_class(seExtended, "SummarizedExperiment") expect_equal(seExtended,seExtendedExpected)