From c0e50fdc52d1bb6a0d35b362f73e6e5de504e55f Mon Sep 17 00:00:00 2001 From: Harry Hung <4848896+HarryHung@users.noreply.github.com> Date: Fri, 19 Jan 2024 15:42:31 +0000 Subject: [PATCH] Update on storage details --- README.md | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/README.md b/README.md index b7c1352..2dd94b3 100644 --- a/README.md +++ b/README.md @@ -52,11 +52,11 @@ The development of this pipeline is part of the GPS Project ([Global Pneumococca - Java 11 or later (up to 21) ([OpenJDK](https://openjdk.org/)/[Oracle Java](https://www.oracle.com/java/)) - [Docker](https://www.docker.com/) or [Singularity](https://sylabs.io/singularity/)/[Apptainer](https://apptainer.org/) - For Linux, [Singularity](https://sylabs.io/singularity/)/[Apptainer](https://apptainer.org/) or [Docker Engine](https://docs.docker.com/engine/) is recommended over [Docker Desktop for Linux](https://docs.docker.com/desktop/). The latter is known to cause permission issues when running the pipeline on Linux. -- It is recommended to have at least 16GB of RAM and 100GB of free storage +- It is recommended to have at least 16GB of RAM and 50GB of free storage > ℹ️ Details on storage - > - The pipeline core files use < 1GB - > - All default databases use ~30GB in total - > - All Docker images use ~12GB in total; alternatively, Singularity images use ~4GB in total + > - The pipeline core files use ~5MB + > - All default databases use ~8GB in total + > - All Docker images use ~13GB in total; alternatively, Singularity images use ~4.5GB in total > - The pipeline generates ~1.8GB intermediate files for each sample on average
(These files can be removed when the pipeline run is completed, please refer to [Clean Up](#clean-up))
(To further reduce storage requirement by sacrificing the ability to resume the pipeline, please refer to [Experimental](#experimental)) ## Accepted Inputs