From c0e50fdc52d1bb6a0d35b362f73e6e5de504e55f Mon Sep 17 00:00:00 2001
From: Harry Hung <4848896+HarryHung@users.noreply.github.com>
Date: Fri, 19 Jan 2024 15:42:31 +0000
Subject: [PATCH] Update on storage details
---
README.md | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/README.md b/README.md
index b7c1352..2dd94b3 100644
--- a/README.md
+++ b/README.md
@@ -52,11 +52,11 @@ The development of this pipeline is part of the GPS Project ([Global Pneumococca
- Java 11 or later (up to 21) ([OpenJDK](https://openjdk.org/)/[Oracle Java](https://www.oracle.com/java/))
- [Docker](https://www.docker.com/) or [Singularity](https://sylabs.io/singularity/)/[Apptainer](https://apptainer.org/)
- For Linux, [Singularity](https://sylabs.io/singularity/)/[Apptainer](https://apptainer.org/) or [Docker Engine](https://docs.docker.com/engine/) is recommended over [Docker Desktop for Linux](https://docs.docker.com/desktop/). The latter is known to cause permission issues when running the pipeline on Linux.
-- It is recommended to have at least 16GB of RAM and 100GB of free storage
+- It is recommended to have at least 16GB of RAM and 50GB of free storage
> ℹ️ Details on storage
- > - The pipeline core files use < 1GB
- > - All default databases use ~30GB in total
- > - All Docker images use ~12GB in total; alternatively, Singularity images use ~4GB in total
+ > - The pipeline core files use ~5MB
+ > - All default databases use ~8GB in total
+ > - All Docker images use ~13GB in total; alternatively, Singularity images use ~4.5GB in total
> - The pipeline generates ~1.8GB intermediate files for each sample on average
(These files can be removed when the pipeline run is completed, please refer to [Clean Up](#clean-up))
(To further reduce storage requirement by sacrificing the ability to resume the pipeline, please refer to [Experimental](#experimental))
## Accepted Inputs