From a9868ef7b055b5dfde3ca027f2d2918f3376e7c9 Mon Sep 17 00:00:00 2001
From: Christian Diener <ch.diener@gmail.com>
Date: Fri, 3 Nov 2023 13:21:11 -0700
Subject: [PATCH] update plate layouts and ps converters

---
 R/convert.R | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/R/convert.R b/R/convert.R
index b632b12..d80d947 100755
--- a/R/convert.R
+++ b/R/convert.R
@@ -124,7 +124,8 @@ reads_to_phyloseq <- function(
         counts,
         reformulate(feature_col, response = "sample_id"),
         value.var = "reads",
-        fill = 0
+        fill = 0,
+        fun.aggregate = sum
     )
     samps <- table$sample_id
     table <- as.matrix(table[, !"sample_id"])