diff --git a/alignment.qza b/alignment.qza new file mode 100644 index 0000000..292a28b Binary files /dev/null and b/alignment.qza differ diff --git a/bray_curtis_distance_matrix.qza b/bray_curtis_distance_matrix.qza new file mode 100644 index 0000000..cd6a2e4 Binary files /dev/null and b/bray_curtis_distance_matrix.qza differ diff --git a/bray_curtis_emperor.qzv b/bray_curtis_emperor.qzv new file mode 100644 index 0000000..6738ff4 Binary files /dev/null and b/bray_curtis_emperor.qzv differ diff --git a/bray_curtis_pcoa_results.qza b/bray_curtis_pcoa_results.qza new file mode 100644 index 0000000..8bdaa9a Binary files /dev/null and b/bray_curtis_pcoa_results.qza differ diff --git a/denoising_stats.qza b/denoising_stats.qza new file mode 100644 index 0000000..22f0652 Binary files /dev/null and b/denoising_stats.qza differ diff --git a/evenness_vector.qza b/evenness_vector.qza new file mode 100644 index 0000000..7c40353 Binary files /dev/null and b/evenness_vector.qza differ diff --git a/faith_pd_vector.qza b/faith_pd_vector.qza new file mode 100644 index 0000000..ab17161 Binary files /dev/null and b/faith_pd_vector.qza differ diff --git a/genus.qza b/genus.qza new file mode 100644 index 0000000..7e6c394 Binary files /dev/null and b/genus.qza differ diff --git a/genus.tsv b/genus.tsv new file mode 100644 index 0000000..54d5259 --- /dev/null +++ b/genus.tsv @@ -0,0 +1,155 @@ +# Constructed from biom file +#OTU ID ERR1883210 ERR1883212 ERR1883214 ERR1883247 ERR1883248 ERR1883260 ERR1883294 ERR1883315 +k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;__ 27.0 41.0 52882.0 21.0 3132.0 21.0 17202.0 6508.0 +k__Bacteria;p__Verrucomicrobia;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Akkermansia 11.0 0.0 54717.0 102.0 4066.0 0.0 0.0 0.0 +k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola 35627.0 9132.0 53.0 5696.0 18124.0 20526.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Faecalibacterium 2180.0 10832.0 10.0 1758.0 3993.0 9281.0 0.0 0.0 +k__Bacteria;p__Firmicutes;__;__;__;__ 1128.0 3565.0 9.0 2848.0 155.0 5218.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__Fusicatenibacter 723.0 4035.0 0.0 639.0 58.0 4459.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__[Eubacterium] 2261.0 1678.0 0.0 1390.0 697.0 3443.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__Blautia 1636.0 3162.0 18.0 2182.0 421.0 5734.0 0.0 0.0 +k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides 7157.0 3280.0 0.0 5518.0 2767.0 5489.0 17.0 0.0 +k__Bacteria;p__Proteobacteria;c__Betaproteobacteria;o__Burkholderiales;f__Sutterellaceae;g__Parasutterella 2043.0 568.0 0.0 55.0 883.0 947.0 77.0 1459.0 +k__Bacteria;p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella 4.0 17.0 2640.0 7.0 186.0 0.0 619.0 4879.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__Anaerostipes 390.0 1730.0 0.0 1018.0 96.0 3203.0 3.0 3.0 +k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides 1958.0 284.0 0.0 1174.0 2629.0 3469.0 3.0 0.0 +k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Barnesiellaceae;g__Barnesiella 532.0 477.0 0.0 1189.0 453.0 1862.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__Mediterraneibacter 613.0 1663.0 280.0 990.0 922.0 2190.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__Anaerobutyricum 466.0 2003.0 0.0 1132.0 35.0 1941.0 0.0 0.0 +k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes 1081.0 171.0 0.0 1540.0 1040.0 985.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus 4.0 5085.0 0.0 8.0 5.0 203.0 247.0 0.0 +k__Bacteria;p__Actinobacteria;c__Actinomycetia;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium 148.0 1726.0 0.0 136.0 277.0 821.0 5.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Peptostreptococcaceae;g__Romboutsia 316.0 2487.0 0.0 72.0 33.0 104.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__Dorea 493.0 1030.0 0.0 518.0 114.0 1468.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__Bariatricus 458.0 811.0 0.0 381.0 116.0 1015.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Acidaminococcus 326.0 364.0 0.0 255.0 212.0 1553.0 0.0 0.0 +k__Bacteria;p__Fusobacteria;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Cetobacterium 0.0 0.0 0.0 0.0 0.0 0.0 0.0 2553.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Peptostreptococcaceae;g__Paeniclostridium 0.0 0.0 2525.0 0.0 0.0 0.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Eubacteriales;g__Gemmiger 154.0 1480.0 0.0 944.0 130.0 723.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__Roseburia 2302.0 167.0 0.0 175.0 0.0 369.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Negativicutes;o__Selenomonadales;f__Sporomusaceae;g__Anaerosinus 0.0 0.0 0.0 0.0 0.0 0.0 1866.0 0.0 +k__Bacteria;p__Firmicutes;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Succiniclasticum 486.0 150.0 0.0 106.0 488.0 584.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium 67.0 38.0 3962.0 31.0 171.0 32.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;__;__ 1931.0 1144.0 0.0 355.0 82.0 1574.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcoides 490.0 0.0 0.0 383.0 290.0 0.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;__ 407.0 173.0 0.0 1139.0 50.0 225.0 0.0 0.0 +k__Bacteria;p__Actinobacteria;c__Coriobacteriia;o__Eggerthellales;f__Eggerthellaceae;g__Adlercreutzia 42.0 618.0 0.0 95.0 3.0 250.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;__ 997.0 757.0 3.0 506.0 121.0 1517.0 0.0 0.0 +k__Bacteria;p__Proteobacteria;c__Deltaproteobacteria;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Desulfovibrio 111.0 165.0 0.0 222.0 42.0 679.0 0.0 0.0 +k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;g__Haemophilus 0.0 97.0 664.0 0.0 97.0 0.0 6.0 0.0 +k__Bacteria;p__Actinobacteria;c__Coriobacteriia;o__Eggerthellales;f__Eggerthellaceae;g__Denitrobacterium 18.0 481.0 0.0 118.0 22.0 196.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Erysipelotrichia;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Erysipelatoclostridium 0.0 30.0 937.0 45.0 54.0 17.0 0.0 0.0 +k__Bacteria;p__Actinobacteria;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella 47.0 303.0 0.0 128.0 69.0 209.0 0.0 0.0 +k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;__;__ 0.0 0.0 0.0 0.0 0.0 0.0 0.0 749.0 +k__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Ligilactobacillus 9.0 0.0 0.0 0.0 0.0 0.0 0.0 682.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__Lachnospira 198.0 165.0 0.0 0.0 223.0 48.0 0.0 0.0 +k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Phytobacter 0.0 0.0 0.0 0.0 0.0 0.0 734.0 0.0 +k__Bacteria;p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Megasphaera 0.0 0.0 5.0 0.0 0.0 0.0 580.0 13.0 +k__Bacteria;p__Fusobacteria;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium 0.0 0.0 217.0 16.0 30.0 0.0 591.0 43.0 +k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Odoribacteraceae;g__Odoribacter 171.0 9.0 0.0 206.0 128.0 271.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium 176.0 95.0 0.0 32.0 40.0 152.0 0.0 0.0 +k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Morganella 0.0 0.0 71.0 0.0 7.0 0.0 294.0 144.0 +k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus 0.0 0.0 294.0 0.0 30.0 0.0 47.0 73.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__Lachnoclostridium 144.0 111.0 0.0 41.0 48.0 455.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Firmicutes;o__Firmicutes;f__Firmicutes;g__Negativibacillus 67.0 146.0 0.0 87.0 0.0 30.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__Coprococcus 20.0 97.0 0.0 84.0 12.0 108.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__Anaerotignum 80.0 0.0 0.0 93.0 26.0 186.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Peptostreptococcaceae;g__Intestinibacter 203.0 6.0 48.0 3.0 14.0 0.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__Hespellia 22.0 39.0 0.0 33.0 22.0 104.0 0.0 0.0 +k__Bacteria;p__Actinobacteria;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Schaalia 0.0 187.0 0.0 5.0 0.0 13.0 41.0 0.0 +k__Bacteria;p__Firmicutes;c__Erysipelotrichia;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Longicatena 18.0 112.0 0.0 71.0 0.0 18.0 0.0 0.0 +k__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;__;__;__ 26.0 0.0 0.0 139.0 0.0 47.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Eubacteriales;g__Intestinimonas 25.0 0.0 0.0 115.0 12.0 47.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Neglectibacter 7.0 70.0 0.0 53.0 0.0 47.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Monoglobus 126.0 13.0 0.0 14.0 6.0 15.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Oscillibacter 117.0 8.0 0.0 221.0 85.0 62.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__[Clostridium] 23.0 58.0 0.0 80.0 0.0 37.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Eubacteriales;g__Colidextribacter 7.0 53.0 0.0 19.0 31.0 30.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__Anaerosporobacter 49.0 0.0 0.0 23.0 0.0 66.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;__ 0.0 0.0 0.0 0.0 0.0 0.0 135.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus 109.0 0.0 0.0 19.0 0.0 0.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Eubacteriales;g__Lawsonibacter 52.0 25.0 0.0 28.0 8.0 43.0 0.0 0.0 +k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pectobacteriaceae;g__Brenneria 0.0 0.0 0.0 0.0 0.0 0.0 111.0 0.0 +k__Bacteria;__;__;__;__;__ 48.0 203.0 53.0 32.0 35.0 63.0 8.0 5.0 +k__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Fructilactobacillus 0.0 106.0 0.0 0.0 0.0 0.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Hungatella 175.0 0.0 0.0 0.0 0.0 6.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Beduini 0.0 0.0 0.0 0.0 0.0 3.0 0.0 100.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__Tyzzerella 12.0 15.0 0.0 10.0 12.0 49.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Flavonifractor 32.0 12.0 0.0 74.0 19.0 46.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__Merdimonas 56.0 0.0 0.0 0.0 0.0 28.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Eubacteriales;g__Howardella 27.0 27.0 0.0 20.0 0.0 8.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruthenibacterium 21.0 16.0 0.0 41.0 0.0 19.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Peptostreptococcaceae;g__Terrisporobacter 0.0 20.0 53.0 0.0 7.0 0.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Erysipelotrichia;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Holdemania 17.0 41.0 0.0 17.0 0.0 22.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Pseudoflavonifractor 16.0 14.0 0.0 67.0 14.0 32.0 0.0 0.0 +k__Bacteria;p__Proteobacteria;__;__;__;__ 14.0 0.0 0.0 14.0 5.0 26.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__Enterocloster 0.0 0.0 0.0 16.0 0.0 62.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Fournierella 15.0 13.0 0.0 65.0 10.0 7.0 0.0 0.0 +k__Bacteria;p__Proteobacteria;c__Betaproteobacteria;o__Burkholderiales;f__Sutterellaceae;g__Sutterella 0.0 0.0 0.0 0.0 0.0 0.0 55.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Eubacteriales Family XIII. Incertae Sedis;__ 11.0 25.0 0.0 19.0 8.0 16.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Erysipelotrichia;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Amedibacillus 0.0 35.0 0.0 21.0 0.0 0.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Eubacteriales Family XIII. Incertae Sedis;g__Aminipila 32.0 0.0 0.0 18.0 0.0 0.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;__ 0.0 0.0 0.0 0.0 0.0 0.0 0.0 48.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Caproiciproducens 3.0 0.0 34.0 0.0 11.0 0.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas 0.0 0.0 39.0 0.0 6.0 0.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Sporobacter 50.0 4.0 0.0 24.0 0.0 0.0 0.0 0.0 +k__Bacteria;p__Actinobacteria;c__Actinomycetia;o__Micrococcales;f__Micrococcaceae;g__Rothia 0.0 31.0 0.0 0.0 0.0 8.0 35.0 0.0 +k__Bacteria;p__Firmicutes;c__Erysipelotrichia;o__Erysipelotrichales;__;__ 0.0 22.0 0.0 0.0 0.0 11.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Erysipelotrichia;o__Erysipelotrichales;f__Turicibacteraceae;g__Turicibacter 18.0 10.0 0.0 14.0 0.0 10.0 0.0 0.0 +k__Bacteria;p__Proteobacteria;c__Betaproteobacteria;o__Neisseriales;f__Chromobacteriaceae;g__Microvirgula 0.0 0.0 0.0 0.0 0.0 0.0 0.0 28.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Anaeromassilibacillus 0.0 0.0 0.0 20.0 0.0 7.0 0.0 0.0 +k__Bacteria;p__Actinobacteria;c__Actinomycetia;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Alloscardovia 0.0 23.0 0.0 0.0 0.0 0.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;__;__ 0.0 0.0 0.0 0.0 0.0 0.0 22.0 0.0 +k__Bacteria;p__Firmicutes;c__Erysipelotrichia;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Longibaculum 0.0 21.0 0.0 0.0 0.0 0.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus 0.0 6.0 0.0 3.0 0.0 12.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillales;g__Gemella 0.0 0.0 0.0 0.0 0.0 0.0 19.0 0.0 +k__Bacteria;p__Actinobacteria;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces 0.0 14.0 0.0 0.0 0.0 4.0 0.0 0.0 +k__Bacteria;p__Actinobacteria;c__Coriobacteriia;o__Eggerthellales;f__Eggerthellaceae;g__Gordonibacter 0.0 14.0 0.0 4.0 0.0 0.0 0.0 0.0 +k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;g__Rodentibacter 5.0 0.0 0.0 0.0 0.0 9.0 0.0 3.0 +k__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus 0.0 0.0 17.0 0.0 0.0 0.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Anaerotruncus 0.0 0.0 0.0 16.0 0.0 0.0 0.0 0.0 +k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;__ 0.0 15.0 0.0 0.0 0.0 0.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Levilactobacillus 0.0 15.0 0.0 0.0 0.0 0.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__Murimonas 0.0 14.0 0.0 0.0 0.0 5.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__Cuneatibacter 0.0 0.0 9.0 0.0 0.0 20.0 0.0 0.0 +k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Providencia 0.0 0.0 0.0 0.0 0.0 0.0 0.0 11.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Eubacteriales Family XIII. Incertae Sedis;g__Ihubacter 10.0 0.0 0.0 4.0 0.0 0.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Erysipelotrichia;o__Erysipelotrichales;f__Erysipelotrichaceae;__ 3.0 0.0 0.0 7.0 0.0 0.0 0.0 0.0 +k__Bacteria;p__Actinobacteria;c__Coriobacteriia;o__Eggerthellales;f__Eggerthellaceae;g__Eggerthella 0.0 10.0 0.0 0.0 0.0 0.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Solibaculum 0.0 0.0 0.0 10.0 0.0 8.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__Lachnoanaerobaculum 0.0 0.0 0.0 0.0 0.0 0.0 10.0 0.0 +k__Bacteria;p__Proteobacteria;c__Betaproteobacteria;o__Neisseriales;f__Neisseriaceae;g__Eikenella 0.0 0.0 3.0 0.0 0.0 0.0 6.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;__;__;__ 7.0 0.0 0.0 10.0 0.0 0.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Eubacteriales Family XIII. Incertae Sedis;g__Emergencia 0.0 0.0 0.0 12.0 0.0 0.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Dialister 0.0 0.0 0.0 0.0 0.0 7.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Erysipelotrichia;o__Erysipelotrichales;f__Erysipelotrichaceae;g__Solobacterium 0.0 5.0 0.0 0.0 0.0 2.0 5.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__[Eubacterium] 6.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus 0.0 0.0 0.0 6.0 0.0 0.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Peptostreptococcaceae;g__Peptostreptococcus 0.0 0.0 0.0 0.0 0.0 0.0 6.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__Moryella 5.0 0.0 0.0 0.0 0.0 4.0 0.0 0.0 +k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__Muribaculum 0.0 0.0 5.0 0.0 0.0 0.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Syntrophomonadaceae;g__Dethiobacter 0.0 0.0 0.0 5.0 0.0 0.0 0.0 0.0 +k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Gabonibacter 0.0 0.0 0.0 5.0 2.0 0.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__Stomatobaculum 0.0 0.0 0.0 0.0 0.0 0.0 5.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Anaerofustis 0.0 4.0 0.0 0.0 0.0 0.0 0.0 0.0 +k__Bacteria;p__Bacteroidetes;c__Bacteroidia;__;__;__ 0.0 4.0 0.0 0.0 0.0 0.0 0.0 0.0 +k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;__;__;__ 0.0 0.0 4.0 0.0 0.0 0.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Butyricicoccus 0.0 0.0 0.0 4.0 0.0 0.0 0.0 0.0 +k__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Prevotella 0.0 0.0 0.0 0.0 0.0 0.0 0.0 4.0 +Unassigned;__;__;__;__;__ 0.0 5.0 4.0 0.0 2.0 0.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Lachnospiraceae;g__Novisyntrophococcus 0.0 3.0 0.0 0.0 0.0 0.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Phocea 0.0 3.0 0.0 0.0 3.0 0.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus 0.0 0.0 0.0 0.0 3.0 0.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Proteiniclasticum 0.0 0.0 0.0 0.0 3.0 0.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc 0.0 0.0 0.0 0.0 0.0 3.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Anaerofilum 0.0 0.0 0.0 0.0 0.0 3.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Eubacteriales Family XIII. Incertae Sedis;g__Alterileibacterium 0.0 0.0 0.0 0.0 0.0 3.0 0.0 0.0 +k__Bacteria;p__Actinobacteria;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Lancefieldella 0.0 0.0 0.0 0.0 0.0 0.0 3.0 0.0 +k__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Alicyclobacillaceae;g__Tumebacillus 0.0 0.0 0.0 0.0 0.0 0.0 3.0 0.0 +k__Bacteria;p__Actinobacteria;c__Actinomycetia;o__Micrococcales;f__Tropherymataceae;g__Tropheryma 0.0 0.0 0.0 0.0 0.0 0.0 3.0 0.0 +k__Bacteria;p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;__ 0.0 0.0 0.0 0.0 0.0 0.0 3.0 0.0 +k__Bacteria;p__Cyanobacteria;c__Cyanobacteria;__;__;__ 0.0 2.0 0.0 0.0 0.0 0.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Tissierellia;o__Tissierellales;f__Peptoniphilaceae;g__Finegoldia 0.0 2.0 0.0 0.0 0.0 0.0 0.0 0.0 +k__Bacteria;p__Verrucomicrobia;c__Verrucomicrobiae;o__Verrucomicrobiales;__;__ 0.0 0.0 2.0 0.0 0.0 0.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Brochothrix 0.0 0.0 0.0 2.0 0.0 0.0 0.0 0.0 +k__Bacteria;p__Firmicutes;c__Clostridia;o__Eubacteriales;f__Eubacteriales Family XIII. 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