From 52d6c15003b033b6e66260a030b17c89ea198127 Mon Sep 17 00:00:00 2001
From: Hamraoui Ali <72599648+alihamraoui@users.noreply.github.com>
Date: Fri, 19 Jul 2024 15:50:19 +0200
Subject: [PATCH] Update README.md

Add conda env installation
---
 README.md | 9 ++++++---
 1 file changed, 6 insertions(+), 3 deletions(-)

diff --git a/README.md b/README.md
index a97c34c..d18e7db 100644
--- a/README.md
+++ b/README.md
@@ -64,17 +64,20 @@ To run ToulligQC without Docker, you need to install the following Python module
 * tqdm
 * pod5
 
-* **Conda environemnt**
+<a name="Conda-environemnt"></a>
+### 1.2 Conda environemnt**
 
 You can use a conda environment to install the required packages:
 
 ```
+git clone https://github.com/GenomicParisCentre/toulligQC.git
+cd toulligqc && python3 setup.py build install
 conda env create -f environment.yml
 conda activate toulliqc
 ```
 
 <a name="pypi-installation"></a>
-### 1.2 Using a PyPi package
+### 1.3 Using a PyPi package
 
 ToulligQC can be more easlily installed with a pip package availlable on the PyPi repository. The following command line  will install the latest version of ToulligQC:
 ```bash
@@ -82,7 +85,7 @@ $ pip3 install toulligqc
 ```
 
 <a name="docker"></a>
-### 1.3 Using Docker
+### 1.4 Using Docker
 ToulligQC and its dependencies are available through a Docker image. To install docker on your system, go to the Docker website (<https://docs.docker.com/engine/installation/>).
 Even if Docker can run on Windows or macOS virtual machines, we recommend to run ToulligQC on a Linux host.
 <a name="docker-image-recovery"></a>