diff --git a/README.md b/README.md index a97c34c..d18e7db 100644 --- a/README.md +++ b/README.md @@ -64,17 +64,20 @@ To run ToulligQC without Docker, you need to install the following Python module * tqdm * pod5 -* **Conda environemnt** + +### 1.2 Conda environemnt** You can use a conda environment to install the required packages: ``` +git clone https://github.com/GenomicParisCentre/toulligQC.git +cd toulligqc && python3 setup.py build install conda env create -f environment.yml conda activate toulliqc ``` -### 1.2 Using a PyPi package +### 1.3 Using a PyPi package ToulligQC can be more easlily installed with a pip package availlable on the PyPi repository. The following command line will install the latest version of ToulligQC: ```bash @@ -82,7 +85,7 @@ $ pip3 install toulligqc ``` -### 1.3 Using Docker +### 1.4 Using Docker ToulligQC and its dependencies are available through a Docker image. To install docker on your system, go to the Docker website (). Even if Docker can run on Windows or macOS virtual machines, we recommend to run ToulligQC on a Linux host.