Table Of Contents

• Main Page
• Coding Startup
  • Developping Requirements
  • Maven
  • Contribute Core Eoulsan
  • Coding Policy
  • Eoulsan javadoc
  • Source code XRef
  • Downloading sources
  • Eoulsan website
• Eoulsan Object model
  • Using the OM outside the workflow engine
  • Sequence
  • Sequence IO
  • Read Sequence
  • Reads IO
  • Filtering Reads
  • GFF3 data
  • GFF3 IO
  • Filtering Alignments
• Support classes
  • Settings Class
  • Eoulsan Runtime Class
  • Data File Class
  • Context Class
  • Exceptions Class
• Plug-ins
  • Writing Step Plugin
  • Writing Data Format
  • Writing Protocol
  • Writing Action
• Plugins for modular steps
  • Filtering Reads
  • Writing Mapper
  • SAM filter
  • Writing Expression Counter