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project.xml
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project.xml
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<?xml version="1.0" encoding="ISO-8859-1"?>
<!--
/*
* Copyright 2001-2004 The Apache Software Foundation.
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
-->
<project>
<!-- the version of maven's project object model -->
<pomVersion>3</pomVersion>
<!-- a unique name for this project -->
<id>doelan</id>
<!-- a short but descriptive name for the project -->
<name>Doelan</name>
<!-- The version of the project under development, e.g.
1.1, 1.2, 2.0-SNAPSHOT -->
<currentVersion>1.0.1</currentVersion>
<!-- details about the organization that 'owns' the project -->
<organization>
<name>École Normale Supérieure Microarray Platform</name>
<url>http://www.transcriptome.ens.fr/</url>
<logo>/images/logos/ens.png</logo>
</organization>
<!-- the year the project started -->
<inceptionYear>2004</inceptionYear>
<package>fr.ens.transcriptome.doelan</package>
<!-- <logo>http://maven.apache.org/images/maven.jpg</logo>-->
<logo>/images/logos/doelan-200.png</logo>
<description>
Doelan is an automated tool to check the quality of produced DNA
microarrays. This software is based on the execution of parameted testsuites
on quality control data to validate batches of chips. This software will helps
microarray platforms in their quality approach such as ISO 9001 certification.
</description>
<!-- a short description of what the project does -->
<shortDescription>A microarray quality test suite software</shortDescription>
<!-- the project home page -->
<url>http://transcriptome.ens.fr/doelan</url>
<!--<url>http://skadi.ens.fr/doelan</url>-->
<!-- <issueTrackingUrl>http://nagoya.apache.org/scarab/servlet/scarab/</issueTrackingUrl> -->
<siteAddress>artemis.ens.fr</siteAddress>
<siteDirectory>/public_html/doelan</siteDirectory>
<distributionSite>artemis.ens.fr</distributionSite>
<distributionDirectory>/public_html/downloads/doelan</distributionDirectory>
<!-- the version control repository and http url for online access
the connection element has the form:
scm:<system>:<system specific connection string> -->
<repository>
<connection>scm:cvs:pserver:[email protected]:/var/lib/cvs:doelan</connection>
<url>http://skadi.ens.fr/cgi-bin/viewcvs.cgi/doelan/</url>
</repository>
<!-- any mailing lists for the project -->
<mailingLists>
<mailingList>
<name>doelan-list</name>
<subscribe>mailto:%64%6f%65%6c%61%6e%2d%6c%69%73%74%2d%73%75%62%73%63%72%69%62%65%40%6d%61%69%6c%6c%69%73%74%2e%62%69%6f%6c%6f%67%69%65%2e%65%6e%73%2e%66%72</subscribe>
<unsubscribe>mailto:%64%6f%65%6c%61%6e%2d%6c%69%73%74%2d%75%6e%73%75%62%73%63%72%69%62%65%40%6d%61%69%6c%6c%69%73%74%2e%62%69%6f%6c%6f%67%69%65%2e%65%6e%73%2e%66%72</unsubscribe>
<!--<subscribe>mailto:[email protected]</subscribe>
<unsubscribe>mailto:[email protected]</unsubscribe>-->
<archive>https://maillist.biologie.ens.fr/wws/arc/doelan-list</archive>
</mailingList>
</mailingLists>
<!-- who the developers are for the project -->
<developers>
<developer>
<name>Laurent Jourdren</name>
<id>jourdren</id>
<!--<email></email>-->
<organization>Plateforme Transcriptome du Département de Biologie - École Normale Supérieure</organization>
<organisationUrl>http://transcriptome.ens.fr/sgdb/presentation/people.php</organisationUrl>
<roles>
<role>Développeur</role>
</roles>
<timezone>1</timezone>
</developer>
</developers>
<contributors>
<contributor>
<name>Stéphane Le Crom</name>
<!--<email></email>-->
<!--<email>see http://transcriptome.ens.fr/sgdb/presentation/people.php</email>-->
<organization>Plateforme Transcriptome du Département de Biologie - École Normale Supérieure</organization>
<organisationUrl>http://transcriptome.ens.fr/sgdb/presentation/people.php</organisationUrl>
<roles>
<role>Bioinformatic responsible</role>
</roles>
<timezone>1</timezone>
</contributor>
<contributor>
<name>Corrine Blugeon</name>
<!--<email></email>-->
<organization>Plateforme Transcriptome du Département de Biologie - École Normale Supérieure</organization>
<organisationUrl>http://transcriptome.ens.fr/sgdb/presentation/people.php</organisationUrl>
<roles>
<role>Tester</role>
</roles>
<timezone>1</timezone>
</contributor>
<contributor>
<name>Fanny Coulpier</name>
<!--<email></email>-->
<organization>Plateforme Transcriptome du Département de Biologie - École Normale Supérieure</organization>
<organisationUrl>http://transcriptome.ens.fr/sgdb/presentation/people.php</organisationUrl>
<roles>
<role>Tester</role>
</roles>
<timezone>1</timezone>
</contributor>
<contributor>
<name>Frédéric Devaux</name>
<!--<email></email>-->
<organization>Plateforme Transcriptome du Département de Biologie - École Normale Supérieure</organization>
<organisationUrl>http://transcriptome.ens.fr/sgdb/presentation/people.php</organisationUrl>
<roles>
<role>Tester</role>
</roles>
<timezone>1</timezone>
</contributor>
<contributor>
<name>Véronique Tanty</name>
<!--<email></email>-->
<organization>Plateforme Transcriptome du Département de Biologie - École Normale Supérieure</organization>
<organisationUrl>http://transcriptome.ens.fr/sgdb/presentation/people.php</organisationUrl>
<roles>
<role>Tester</role>
</roles>
<timezone>1</timezone>
</contributor>
</contributors>
<!-- jar files the project is dependent on -->
<licenses>
<license>
<name>General Public Licence</name>
<url>http://www.gnu.org/licenses/gpl.txt</url>
<distribution>repo</distribution>
</license>
</licenses>
<dependencies>
<dependency>
<id>commons-collections</id>
<version>3.0</version>
<url>http://jakarta.apache.org/commons/</url>
</dependency>
<dependency>
<id>commons-primitives</id>
<version>1.0</version>
<url>http://jakarta.apache.org/commons/</url>
</dependency>
<dependency>
<id>dom4j</id>
<version>1.4</version>
<url>http://www.dom4j.org/</url>
</dependency>
<dependency>
<id>log4j</id>
<version>1.2.8</version>
<url>http://logging.apache.org/</url>
</dependency>
<dependency>
<id>commons-cli</id>
<version>1.0</version>
<url>http://jakarta.apache.org/commons/</url>
</dependency>
<dependency>
<groupId>netscape</groupId>
<artifactId>netscape</artifactId>
<version>1.0</version>
</dependency>
<dependency>
<groupId>ens-transcriptome</groupId>
<artifactId>launcher</artifactId>
<version>1.0</version>
<url>http://www.transcriptome.ens.fr/launcher</url>
</dependency>
<dependency>
<groupId>ens-transcriptome</groupId>
<artifactId>nividic</artifactId>
<version>0.6</version>
<url>http://www.transcriptome.ens.fr/nividic</url>
</dependency>
<!-- docbook -->
<!--<dependency>
<groupId>maven-plugins</groupId>
<artifactId>maven-sdocbook-plugin</artifactId>
<version>1.4.1</version>
<type>plugin</type>
<url>http://maven-plugins.sourceforge.net/sdocbook</url>
</dependency>-->
<dependency>
<groupId>jfree</groupId>
<artifactId>jfreechart</artifactId>
<version>0.9.21</version>
</dependency>
<dependency>
<groupId>jfree</groupId>
<artifactId>jcommon</artifactId>
<version>0.9.6</version>
</dependency>
<dependency>
<groupId>jgoodies</groupId>
<artifactId>looks</artifactId>
<version>1.2.2</version>
</dependency>
<dependency>
<groupId>xalan</groupId>
<artifactId>xalan</artifactId>
<version>2.6.0</version>
<properties>
<classloader>root</classloader>
</properties>
</dependency>
</dependencies>
<!-- build information for the project -->
<build>
<!-- <nagEmailAddress>[email protected]</nagEmailAddress> -->
<nagEmailAddress>[email protected]</nagEmailAddress>
<sourceDirectory>src/main/java</sourceDirectory>
<unitTestSourceDirectory>src/test</unitTestSourceDirectory>
<unitTest>
<includes>
<include>**/*Test.java</include>
</includes>
<excludes>
<exclude>**/NaughtyTest.java</exclude>
</excludes>
<resources>
<resource>
<directory>src/test/files</directory>
<targetPath>files</targetPath>
<include>*</include>
</resource>
</resources>
</unitTest>
<resources>
<resource>
<directory>src/main/conf</directory>
<includes>
<include>*.properties</include>
<exclude>app.properties</exclude>
</includes>
</resource>
<resource>
<directory>src/main/java/files</directory>
<targetPath>files</targetPath>
<includes>
<include>*</include>
</includes>
</resource>
</resources>
</build>
<reports>
<report>maven-jdepend-plugin</report>
<report>maven-checkstyle-plugin</report>
<report>maven-changes-plugin</report>
<!--<report>maven-changelog-plugin</report>
<report>maven-file-activity-plugin</report>
<report>maven-developer-activity-plugin</report>
<report>maven-statcvs-plugin</report>-->
<report>maven-javadoc-plugin</report>
<report>maven-jxr-plugin</report>
<report>maven-junit-report-plugin</report>
<report>maven-tasklist-plugin</report>
<report>maven-pmd-plugin</report>
<report>maven-simian-plugin</report>
<report>maven-faq-plugin</report>
<report>maven-license-plugin</report>
<!--<report>maven-linkcheck-plugin</report>-->
</reports>
</project>