From ad0cf7db56a4d47d50204dfe4aa0a1c9395764ad Mon Sep 17 00:00:00 2001
From: Hamraoui Ali <72599648+alihamraoui@users.noreply.github.com>
Date: Tue, 3 Sep 2024 18:11:11 +0200
Subject: [PATCH] Update README.md

---
 README.md | 9 +++++++++
 1 file changed, 9 insertions(+)

diff --git a/README.md b/README.md
index 549f631..b18f298 100644
--- a/README.md
+++ b/README.md
@@ -104,6 +104,15 @@ The human GRCh38 [reference transcriptome](https://ftp.ensembl.org/pub/release-1
                       --gtf dataset/genes.gtf
 ```
 
+##### USING SPARSIM PRESET MATRICES (e.g Chu et al. 10X Genomics datasets)
+
+```bash
+nextflow run main.nf --matrix Chu_param_preset \
+                      --transcriptome datasets/Homo_sapiens.GRCh38.cdna.all.fa \
+                      --features gene_name \
+                      --gtf datasets/Homo_sapiens.GRCh38.112.gtf
+```
+
 ##### WITH PCR AMPLIFICTION
 
 ```bash