forked from biocommons/seqrepo-rest-service
-
Notifications
You must be signed in to change notification settings - Fork 0
/
pyproject.toml
132 lines (105 loc) · 2.91 KB
/
pyproject.toml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
[project]
name = "seqrepo-rest-service"
authors = [
{ name = "biocommons contributors", email = "[email protected]" },
]
description = "SeqRepo REST Service"
readme = "README.md"
license = { file="LICENSE.txt" }
requires-python = ">=3.9"
classifiers = [
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"License :: OSI Approved :: Apache Software License",
"Operating System :: OS Independent",
]
dynamic = ["version"]
dependencies = [
"biocommons.seqrepo ~= 0.6",
"coloredlogs",
"connexion[swagger-ui] ~= 2.2",
"Flask ~= 2.2",
]
[project.optional-dependencies]
dev = [
"bandit ~= 1.7",
"build ~= 0.8",
"flake8 ~= 4.0",
"ipython ~= 8.4",
"isort ~= 5.10",
"mypy-extensions ~= 1.0",
"pre-commit ~= 3.4",
"pylint ~= 2.14",
"pytest-cov ~= 4.1",
"pytest-optional-tests",
"pytest ~= 7.1",
"pyright~=1.1",
"ruff == 0.4.4",
"tox ~= 3.25",
"vcrpy",
]
docs = ["mkdocs"]
[project.scripts]
seqrepo-rest-service = "seqrepo_rest_service.cli:main"
[project.urls]
"Homepage" = "https://github.com/biocommons/seqrepo-rest-service"
"Bug Tracker" = "https://github.com/biocommons/seqrepo-rest-service/issues"
[build-system]
requires = ["setuptools ~= 69.0", "setuptools_scm[toml] ~= 8.0"]
build-backend = "setuptools.build_meta"
[tool.setuptools]
include-package-data = true
[tool.setuptools.packages.find]
where = ["src"]
exclude = ["__pycache__", "*.pyc"]
namespaces = true
[tool.setuptools.package-data]
"*" = ["*.gz", "*.json", "*.yaml"]
[tool.setuptools_scm]
# https://docs.pytest.org/en/6.2.x/customize.html#pyproject-toml
[tool.pytest.ini_options]
addopts = "-s -v -x --strict-markers -m 'not extra' --doctest-modules --cov=src"
doctest_optionflags = [
"ALLOW_BYTES",
"ALLOW_UNICODE",
"ELLIPSIS",
"IGNORE_EXCEPTION_DETAIL",
"NORMALIZE_WHITESPACE",
]
markers = [
"network: tests that require network connectivity",
"slow: slow tests that should be run infrequently",
"vcr: tests with cached data",
]
[tool.coverage.run]
branch = true
source = ["biocommons.example"]
omit = ["*_test.py", "*/test/*", "*/tests/*"]
[tool.coverage.report]
show_missing = true
exclude_lines = [
# Have to re-enable the standard pragma
"pragma: no cover",
# Don't complain about missing debug-only code:
"def __repr__",
"if self.debug",
# Don't complain if tests don't hit defensive assertion code:
"raise AssertionError",
"raise NotImplementedError",
# Don't complain if non-runnable code isn't run:
"if __name__ == .__main__.:",
]
[tool.isort]
profile = "black"
src_paths = ["src", "tests"]
[tool.pyright]
include = ["src", "tests"]
[tool.pylint.'MESSAGES CONTROL']
disable = "R0913"
[tool.pylint.format]
max-line-length = 100
[tool.ruff]
src = ["src", "tests"]
line-length = 100