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missing attribute names and descriptions #28

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kzuberi opened this issue Jul 17, 2015 · 2 comments
Open

missing attribute names and descriptions #28

kzuberi opened this issue Jul 17, 2015 · 2 comments
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@haroldr

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kzuberi commented Jul 17, 2015

Only attribute ids such as IPR016132 for InterPro appear to be making it as far as generic_db.
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kzuberi commented Jul 17, 2015

The attribute processing scripts are expecting two column (attribute_id, attribute_description) files but the input is actually a triplet of (attribute_id, attribute_name, attribute_description). This causes a join during processing to produce an empty set of descriptions.

I've committed a fix, but need to update the documentation. Needs testing.

@kzuberi kzuberi reopened this Jul 17, 2015
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kzuberi commented Jul 17, 2015

@haroldr, let me know if this works out, thanks.

kzuberi added a commit that referenced this issue Jul 21, 2015
@kzuberi
fix attribute to id mapping for format change due to #28
ad2049e
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