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UTR #9

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hcsun1 opened this issue Aug 1, 2023 · 0 comments
Open

UTR #9

hcsun1 opened this issue Aug 1, 2023 · 0 comments

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@hcsun1
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hcsun1 commented Aug 1, 2023 •
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Hello,

After running BRAKER3, I used the BAM file and augustus.hints.gtf to generate an annotated file with UTRs. However,I noticed that there is one gene with two UTRs that are unusually far apart. Is this situation normal, and can I consider it as a correct result? Thank you for your assistance.

Below is the command I used for running:

/data/lilab/wli1/software/GUSHR/gushr.py -c 10 -t augustus.hints.gtf -b ../../rnaseq.bam -g ../../G3.unphased-genome.v2.fasta.masked -o G3.UTR

1690854424124
@hcsun1 hcsun1 changed the title UTR too long UTR Aug 1, 2023
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