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The number of genes that exceed normal #53

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fishman311 opened this issue Jul 3, 2024 · 1 comment
Open

The number of genes that exceed normal #53

fishman311 opened this issue Jul 3, 2024 · 1 comment

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@fishman311
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I used galba to predict gene structure. Although busco was higher than other soft, there were too many genes.
The normal value is 2.5w and the forecast is 3.3w.
Why is that?

@KatharinaHoff
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I have no idea what 2.5w and 3.3w are supposed to be. And what is other soft?

Generally, Augustus tends to slighly overpredict. We introduced a filtering step in Galba on the basis of DIAMOND hits in the database - but outcome depends on the database, of course.

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