CHANGELOG.md

Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

[Unreleased]

Fixed

Changed

Added

Removed

Deprecated

[24.7.0] - 2024-09-12

Changed

• Migrated to use Miniforge instead of Miniconda
• "Update" to Miniforge version to 24.7.1-0
  • Note: Miniforge is often behind Miniconda in version numbers, so this is not a downgrade, but rather the latest version of Miniforge
• Make a symlink of f2py to f2py3 to fix an issue with the wrong f2py being found sometimes on discover
• Update both .condarc and .mambarc to use the conda-forge channel as the default channel
• Add a test at the end to ensure no defaults channel packages are installed
• Add -ffnet-hack for a hack to install ffnet on bucy (nothing else seems to need it)
  • This flag uses a fork of ffnet with hardcoded references to gfortran

Added

• Explicit Mamba Packages
  • uxarray
• Explicit Pip Packages
  • basemap
  • redis (moved from Mamba to Pip)
  • Flask
• Added basemap example

Removed

• Removed --conda option
• Explicit Mamba Packages
  • redis (moved from Mamba to Pip)
  • redis-py (seems not to exist in the conda-forge channel or in PyPI)
  • sphinxcontrib (seems not to exist in the conda-forge channel or in PyPI)
  • get_terminal_size (built-in to Python 3.3+ in the shutil module)

[24.4.0] - 2024-05-30

Fixed

• Fixed another odd libcxx issue between miniconda and conda-forge (involving tuple)
• Fix issue with ipython (see ipython/ipython#14260) by uninstalling and re-installing prompt_toolkit

Changed

• Updated to Miniconda 24.4.0-0.
• Use MacOSX matplotlib backend on macOS and TkAgg on Linux
  • Update sed command to make this change

Added

• Explicit Conda Packages
  • earthaccess
• Explicit Pip Packages
  • pyephem
• Added ephem example

Removed

• Removed old sed command on numpy as file being altered no longer exists

[24.1.2] - 2024-04-09

Changed

• Updated to Miniconda 24.1.2-0.
• Updated to Python 3.12 by default.
• Updated to use Micromamba by default on Linux.
• Added BLIS as an allowed BLAS.
• Enhanced ffnet installation on macOS: The script now conditionally installs ffnet if a gfortran compiler is found.

Added

• Explicit Conda Packages
  • haversine
  • ford
  • autopep8
  • mdutils
  • f90wrap (moved from Pip to Conda)
• Explicit Pip Packages
  • wordcloud (moved from Conda to Pip)
  • meson (required for ffnet)
  • pybufrkit

Removed

• Explicit Conda Packages
  • wordcloud (moved to Pip from Conda)
• Explicit Pip Packages
  • theano (no longer maintained)
  • blaze (no longer maintained)
  • f90wrap (moved to Conda from Pip)

[23.5.2] - 2023-10-17

Fixed

• Fixed possible pygrads install issue
• Fixed odd libcxx issue between miniconda and conda-forge
• Fixed issue with gfortran version detection

Added

• Added micromamba support

  • micromamba is a new, experimental, lightweight conda installer; we use it by default on macOS
  • mamba is still default on Linux

• Explicit Conda Packages

  • scikit-learn
  • yamllint
  • verboselogs
  • libblas
    • Defaults to using accelerate on Arm-based macOS, and mkl on Intel-based macOS and Linux
  • movingpandas
  • geoviews
  • hvplot (pinned to 0.8.3)
  • bokeh (pinned to 3.1)
  • geopandas
  • intake
  • intake-parquet
  • intake-xarray
  • pykdtree
  • pyogrio
  • contourpy
  • sunpy

• Explicit Pip Packages

  • lxml
  • juliandate

• Added example for ffnet

• Added changelog enforcer

Changed

• Removed src/ directory as unnecessary; all files are now in the root
• Updated example miniconda version to 23.5.2-0
• Updated example Python version to 3.11
• Explicit Pip Packages
  • ffnet
    • Moved to use a Git master branch of the package to fix issues with Python3 and scipy
    • Requires gfortran 8.3 or higher
• Updated readmes with latest versions

Removed

• Explicit Conda Packages
  • basemap (obsolete, use cartopy)
  • cubes (caused downgrade to Python 3.9)
  • gooey (caused downgrade of many packages)
  • mdp (obsolete, not supported by 3.11)

[4.11.0] - 2022-04-28

Added

• Explicit Conda Packages

  • wordcloud
  • zarr

• Explicit Pip Packages

  • ruamel.yaml
  • tensorflow
  • evidential-deep-learning
  • yaplon

Changed

• Only install pythran on Linux
• Instead of removing the mpi* files in bin, we now rename to esmf-mpi*
• Moved xgboost from mamba install to pip (due to pip having the latest version)

Removed

• Removed the anaconda install scripts
• Removed support for Python 2

[4.10.3] - 2022-01-13

Changed

• Made mamba the default installer. If you want to use conda, pass in --conda flag
• ffnet is only installed on Linux

Added

• Explicit Conda Packages
  • cython
  • gsw
  • pythran
• Other Python Packages
  • PyGrADS 3
• Added .editorconfig file

[4.9.2] - 2021-05-04

Changed

• Added support for the mamba installer. This is now recommended for installs. Use --mamba to use

Deprecated

• Miniconda no longer supports Python 2. From here on out all additions are for Python 3 only

Added

• Explicit Conda Packages
  • boto3
  • questionary
  • s3fs
  • timezonefinder
  • xgrads

Removed

• Removed numpy/intel injection

[4.8.3] - 2020-08-31

Changed

• Moved to use Miniconda installers instead of Anaconda
  • This is mainly done due to Anaconda no longer being able to satisfy the package requirement graph
  • This also means more packages are in now explicitly installed with conda as we now need to install them specifically (they came from Anaconda before)

Added

• Explicit Conda Packages

  • astropy
  • babel
  • beautifulsoup4
  • colorama
  • esmpy
  • fastcache
  • get_terminal_size
  • gmp
  • greenlet
  • imageio
  • intel-openmp
  • jbig
  • jupyter
  • jupyterlab
  • lzo
  • mkl
  • mkl-service
  • mkl_fft
  • mkl_random
  • numba
  • numpy
  • pipenv (moved from pip)
  • proj4<6 (Python 2)
  • proj (Python 3)
  • pydap
  • pygrib
  • pypng
  • pytables
  • pytest
  • seaborn
  • scipy
  • sphinxcontrib
  • tbb
  • tbb4py
  • xesmf
  • xgcm

• Explicit Pip Packages

  • blaze
  • h5py
  • metpy (Python 3 only)
  • pycircleci (Python 3 only)
  • siphon (Python 3 only)
  • theano

Removed

• Explicit Conda Packages
  • theano (moved to pip)
  • blaze (moved to pip)

[2019.10] - 2020-01-15

Added

• Explicit Conda Packages
  • gooey
  • hpccm
  • rasterio
• Explicit Pip Packages
  • f90wrap
  • pymp-pypi

Removed

• Explicit Conda Packages
  • cis
  • django
  • f90wrap (moved to pip)
  • joblib
  • launcher
  • mock
  • psycopg2
  • pygrib
  • util-linux
  • xorg-libsm

Changed

• Moved some conda packages to an earlier conda install command to satisfy dependency chain

[2019.03] - 2019-05-08

Added

• Initial release
  • Note: All listed packages are only those expressly asked for with a conda install. Some "basic" packages are from Anaconda, while conda will of course install other dependencies as well. For example, numpy is not in this list, but is part of GEOSpyD
• Explicit Conda Packages
  • argcomplete
  • basemap
  • biggus
  • biopython
  • blaze
  • cartopy
  • cdsapi
  • cmocean
  • cis
  • configargparse
  • configobj
  • cubes
  • django
  • eofs
  • f90nml
  • f90wrap
  • gdal
  • geotiff
  • iris
  • joblib
  • krb5
  • launcher
  • libmo_unpack
  • matplotlib
  • mdp
  • mock
  • mo_pack
  • nc_time_axis
  • netcdf4
  • pip
  • plotly
  • psycopg2
  • pyasn1
  • pygrib
  • pyhdf
  • pyspharm
  • redis
  • redis-py
  • requests-toolbelt
  • seawater
  • sockjs-tornado
  • sphinx_rtd_theme
  • theano
  • tk
  • twine
  • ujson
  • util-linux (Linux only)
  • virtualenv
  • wxpython
  • wsgiref (Python 2 only)
  • windspharm
  • xarray
  • xgboost
  • xorg-kbproto
  • xorg-libice
  • xorg-libsm
  • xorg-libx11
  • xorg-libxext
  • xorg-libxrender
  • xorg-renderproto
  • xorg-xextproto
  • xorg-xproto
• Explicit Pip Packages
  • ffnet
  • pipenv
  • PyRTF3 (Python 3)
  • rtfw (Python 2)
• Other Python Packages
  • PyGrADS (Python 2)
• Code injections
  • Fix for f2py and numpy
  • Fix for numpy and Intel
  • Make TkAgg the default matplotlib backend as that is the only one supported on all systems tested