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and the log file :
`
Creating input
Nb input datasets: 5
Reads per sample used: all
Maximum ressources used by Simka:
- 5 simultaneous processes for counting the kmers (per job: 9 cores, 1000 MB memory)
- 48 simultaneous processes for merging the kmer counts (per job: 1 cores, memory undefined)
Nb partitions: 48 partitions
Counting k-mers... (log files are ./simka_temp_output/simka_output_temp//log/count_*)
Hi,
The simple test has been stuck for some hours and all files in the the temporary folder merge_synchro/ are empty. Nothing has changed in my folders since 5 hours ago.
Here is the error file :
^M[Counting datasets ] 0 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: -1.0 % mem: [ 12, 12, 12] MB ^M[Counting datasets ] 20 % elapsed: 0 min 0 sec remaining: 0 min 1 sec cpu: 83.3 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 20 % elapsed: 0 min 0 sec remaining: 0 min 1 sec cpu: 83.3 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 20 % elapsed: 0 min 0 sec remaining: 0 min 1 sec cpu: 83.3 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 20 % elapsed: 0 min 0 sec remaining: 0 min 1 sec cpu: 83.3 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 20 % elapsed: 0 min 0 sec remaining: 0 min 1 sec cpu: 83.3 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 20 % elapsed: 0 min 0 sec remaining: 0 min 1 sec cpu: 83.3 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 20 % elapsed: 0 min 0 sec remaining: 0 min 1 sec cpu: 83.3 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 20 % elapsed: 0 min 0 sec remaining: 0 min 1 sec cpu: 83.3 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 20 % elapsed: 0 min 0 sec remaining: 0 min 1 sec cpu: 83.3 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 20 % elapsed: 0 min 0 sec remaining: 0 min 1 sec cpu: 83.3 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 20 % elapsed: 0 min 0 sec remaining: 0 min 1 sec cpu: 83.3 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 20 % elapsed: 0 min 0 sec remaining: 0 min 1 sec cpu: 80.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 20 % elapsed: 0 min 0 sec remaining: 0 min 1 sec cpu: 80.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 20 % elapsed: 0 min 0 sec remaining: 0 min 1 sec cpu: 80.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 20 % elapsed: 0 min 0 sec remaining: 0 min 1 sec cpu: 80.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 20 % elapsed: 0 min 0 sec remaining: 0 min 1 sec cpu: 80.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 20 % elapsed: 0 min 0 sec remaining: 0 min 1 sec cpu: 80.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 20 % elapsed: 0 min 0 sec remaining: 0 min 1 sec cpu: 80.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 20 % elapsed: 0 min 0 sec remaining: 0 min 1 sec cpu: 80.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 40 % elapsed: 0 min 1 sec remaining: 0 min 2 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 40 % elapsed: 0 min 1 sec remaining: 0 min 2 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 40 % elapsed: 0 min 1 sec remaining: 0 min 2 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 40 % elapsed: 0 min 1 sec remaining: 0 min 2 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 40 % elapsed: 0 min 1 sec remaining: 0 min 2 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 40 % elapsed: 0 min 1 sec remaining: 0 min 2 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 40 % elapsed: 0 min 1 sec remaining: 0 min 2 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 40 % elapsed: 0 min 1 sec remaining: 0 min 2 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 40 % elapsed: 0 min 1 sec remaining: 0 min 2 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 40 % elapsed: 0 min 1 sec remaining: 0 min 2 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 40 % elapsed: 0 min 1 sec remaining: 0 min 2 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 40 % elapsed: 0 min 1 sec remaining: 0 min 2 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 40 % elapsed: 0 min 1 sec remaining: 0 min 2 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 40 % elapsed: 0 min 1 sec remaining: 0 min 2 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 40 % elapsed: 0 min 1 sec remaining: 0 min 2 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 40 % elapsed: 0 min 1 sec remaining: 0 min 2 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 40 % elapsed: 0 min 1 sec remaining: 0 min 2 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 40 % elapsed: 0 min 1 sec remaining: 0 min 2 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 40 % elapsed: 0 min 1 sec remaining: 0 min 2 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 40 % elapsed: 0 min 1 sec remaining: 0 min 2 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 60 % elapsed: 0 min 1 sec remaining: 0 min 1 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 60 % elapsed: 0 min 1 sec remaining: 0 min 1 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 60 % elapsed: 0 min 1 sec remaining: 0 min 1 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 60 % elapsed: 0 min 1 sec remaining: 0 min 1 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 60 % elapsed: 0 min 1 sec remaining: 0 min 1 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 60 % elapsed: 0 min 1 sec remaining: 0 min 1 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 60 % elapsed: 0 min 1 sec remaining: 0 min 1 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 60 % elapsed: 0 min 1 sec remaining: 0 min 1 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 60 % elapsed: 0 min 1 sec remaining: 0 min 1 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 60 % elapsed: 0 min 1 sec remaining: 0 min 1 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 60 % elapsed: 0 min 1 sec remaining: 0 min 1 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 60 % elapsed: 0 min 1 sec remaining: 0 min 1 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 60 % elapsed: 0 min 1 sec remaining: 0 min 1 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 60 % elapsed: 0 min 1 sec remaining: 0 min 1 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 60 % elapsed: 0 min 1 sec remaining: 0 min 1 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 60 % elapsed: 0 min 1 sec remaining: 0 min 1 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 60 % elapsed: 0 min 1 sec remaining: 0 min 1 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 60 % elapsed: 0 min 1 sec remaining: 0 min 1 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 60 % elapsed: 0 min 1 sec remaining: 0 min 1 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 60 % elapsed: 0 min 1 sec remaining: 0 min 1 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 80 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 80 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 80 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 80 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 80 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 80 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 80 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 80 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 80 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 80 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 80 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 80 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 80 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 80 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 80 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 80 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 80 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 80 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 80 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 80 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 100 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 100 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 100 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 100 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 100 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 100 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 100 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 100 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 100 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 100 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 100 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 100 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 100 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 100 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 100 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 100 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 100 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 100 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 100 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Counting datasets ] 100 % elapsed: 0 min 1 sec remaining: 0 min 0 sec cpu: 16.0 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 0 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: -1.0 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 2.08 % elapsed: 0 min 0 sec remaining: 0 min 10 sec cpu: 19.0 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 2.08 % elapsed: 0 min 0 sec remaining: 0 min 10 sec cpu: 19.0 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 4.17 % elapsed: 0 min 0 sec remaining: 0 min 5 sec cpu: 19.0 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 4.17 % elapsed: 0 min 0 sec remaining: 0 min 5 sec cpu: 19.0 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 6.25 % elapsed: 0 min 0 sec remaining: 0 min 3 sec cpu: 19.0 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 6.25 % elapsed: 0 min 0 sec remaining: 0 min 3 sec cpu: 19.0 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 8.33 % elapsed: 0 min 0 sec remaining: 0 min 2 sec cpu: 19.0 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 8.33 % elapsed: 0 min 0 sec remaining: 0 min 2 sec cpu: 19.0 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 10.4 % elapsed: 0 min 0 sec remaining: 0 min 2 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 10.4 % elapsed: 0 min 0 sec remaining: 0 min 2 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 12.5 % elapsed: 0 min 0 sec remaining: 0 min 2 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 12.5 % elapsed: 0 min 0 sec remaining: 0 min 2 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 14.6 % elapsed: 0 min 0 sec remaining: 0 min 1 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 14.6 % elapsed: 0 min 0 sec remaining: 0 min 1 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 16.7 % elapsed: 0 min 0 sec remaining: 0 min 1 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 16.7 % elapsed: 0 min 0 sec remaining: 0 min 1 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 18.8 % elapsed: 0 min 0 sec remaining: 0 min 1 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 18.8 % elapsed: 0 min 0 sec remaining: 0 min 1 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 20.8 % elapsed: 0 min 0 sec remaining: 0 min 1 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 20.8 % elapsed: 0 min 0 sec remaining: 0 min 1 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 22.9 % elapsed: 0 min 0 sec remaining: 0 min 1 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 22.9 % elapsed: 0 min 0 sec remaining: 0 min 1 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 25 % elapsed: 0 min 0 sec remaining: 0 min 1 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 25 % elapsed: 0 min 0 sec remaining: 0 min 1 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 25 % elapsed: 0 min 0 sec remaining: 0 min 1 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 27.1 % elapsed: 0 min 0 sec remaining: 0 min 1 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 27.1 % elapsed: 0 min 0 sec remaining: 0 min 1 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 29.2 % elapsed: 0 min 0 sec remaining: 0 min 1 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 29.2 % elapsed: 0 min 0 sec remaining: 0 min 1 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 31.2 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 31.2 % elapsed: 0 min 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18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 41.7 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 43.8 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 43.8 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 45.8 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 45.8 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 47.9 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 47.9 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 50 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 50 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 50 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 52.1 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 52.1 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 54.2 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 54.2 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 56.2 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 56.2 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 58.3 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 58.3 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 60.4 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 60.4 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 18.2 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 62.5 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 17.4 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 62.5 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 17.4 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 64.6 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 17.4 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 64.6 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 17.4 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 66.7 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 17.4 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 66.7 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 17.4 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 68.8 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 21.7 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 68.8 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 21.7 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 70.8 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 21.7 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 70.8 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 21.7 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 72.9 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 21.7 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 72.9 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 21.7 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 75 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 21.7 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 75 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 21.7 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 75 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 21.7 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 77.1 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 21.7 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 77.1 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 21.7 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 79.2 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 21.7 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 79.2 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 21.7 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 81.2 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 21.7 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 81.2 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 21.7 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 83.3 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 21.7 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 83.3 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 21.7 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 85.4 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 21.7 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 85.4 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 21.7 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 87.5 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 21.7 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 87.5 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 21.7 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 89.6 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 21.7 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 89.6 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 21.7 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 91.7 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 21.7 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 91.7 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 21.7 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 93.8 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 21.7 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 93.8 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 21.7 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 95.8 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 21.7 % mem: [ 13, 13, 13] MB ^M[Merging datasets ] 95.8 % elapsed: 0 min 0 sec remaining: 0 min 0 sec cpu: 21.7 % mem: [ 13, 13, 13] MB ~
and the log file :
`
Creating input
Nb input datasets: 5
Reads per sample used: all
Maximum ressources used by Simka:
- 5 simultaneous processes for counting the kmers (per job: 9 cores, 1000 MB memory)
- 48 simultaneous processes for merging the kmer counts (per job: 1 cores, memory undefined)
Nb partitions: 48 partitions
Counting k-mers... (log files are ./simka_temp_output/simka_output_temp//log/count_*)
Kmer repartition
0: 270
1: 294
2: 300
3: 323
4: 344
5: 324
6: 275
7: 239
8: 296
9: 298
10: 297
11: 304
12: 278
13: 312
14: 311
15: 320
16: 362
17: 320
18: 303
19: 340
20: 293
21: 269
22: 358
23: 293
24: 291
25: 274
26: 344
27: 305
28: 323
29: 308
30: 302
31: 277
32: 300
33: 309
34: 338
35: 278
36: 310
37: 300
38: 284
39: 330
40: 303
41: 280
42: 317
43: 324
44: 286
45: 388
46: 294
47: 282
Merging k-mer counts and computing distances... (log files are /simka_temp_output/simka_output_temp//log/merge_*)
`
How long should this test take ?
Thank you very much in advance,
Best regards
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