From b1a27642f873904838bef1b7d9224acdfb0c78fa Mon Sep 17 00:00:00 2001 From: Rayan CHIKHI Date: Tue, 21 Nov 2023 16:15:03 +0000 Subject: [PATCH] minor --- gatb-core/src/gatb/debruijn/impl/LinkTigs.cpp | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/gatb-core/src/gatb/debruijn/impl/LinkTigs.cpp b/gatb-core/src/gatb/debruijn/impl/LinkTigs.cpp index 81aab1ccd..83d1bef83 100644 --- a/gatb-core/src/gatb/debruijn/impl/LinkTigs.cpp +++ b/gatb-core/src/gatb/debruijn/impl/LinkTigs.cpp @@ -57,7 +57,7 @@ void link_tigs(string unitigs_filename, int kmerSize, int nb_threads, uint64_t & bcalm_logging = verbose; BankFasta* out = new BankFasta(unitigs_filename+".linked"); if (kmerSize < 4) { std::cout << "error, link_unitigs doesn't support k<5, sorry. Contact a developer if you really need k<4 support (alternatively: construct that tiny dBG using Python :)" << std::endl; exit(1); } - logging("Finding links between unitigs"); + logging("Finding links between tigs"); for (int pass = 0; pass < nb_passes; pass++) link_unitigs_pass(unitigs_filename, verbose, pass, kmerSize, edge_km_representation, renumber_unitigs ); @@ -68,7 +68,7 @@ void link_tigs(string unitigs_filename, int kmerSize, int nb_threads, uint64_t & system::impl::System::file().remove (unitigs_filename); system::impl::System::file().rename (unitigs_filename+".linked", unitigs_filename); - logging("Done finding links between unitigs"); + logging("Done finding links between tigs"); }