From c8d5a8a505fb960a85008c2b01bc4e8e9677eec3 Mon Sep 17 00:00:00 2001
From: Xiao Gui <xgui3783@gmail.com>
Date: Thu, 7 Nov 2024 13:32:52 +0100
Subject: [PATCH] fixed zarr rotation

---
 frontend/src/const.ts                  | 2 +-
 frontend/src/state/inputs/selectors.ts | 4 ++--
 frontend/src/state/outputs/effects.ts  | 4 +++-
 3 files changed, 6 insertions(+), 4 deletions(-)

diff --git a/frontend/src/const.ts b/frontend/src/const.ts
index 136fba0d..50d94b50 100644
--- a/frontend/src/const.ts
+++ b/frontend/src/const.ts
@@ -429,7 +429,7 @@ export type ZarrAttrs = {
     axes: {
       name: "x" | "y" | "z" | string
       type: "space" | string
-      units: "micrometer" | string
+      unit: "micrometer" | string
     }[]
     datasets: {
       coordinateTransformations: {
diff --git a/frontend/src/state/inputs/selectors.ts b/frontend/src/state/inputs/selectors.ts
index 044e48fb..a4a2c506 100644
--- a/frontend/src/state/inputs/selectors.ts
+++ b/frontend/src/state/inputs/selectors.ts
@@ -98,7 +98,7 @@ const incInfoPipe = pipe(
           if (axes.length !== 3) {
             return throwError(() => new Error(`Can only deal with axes with length 3`))
           }
-          for (const { type, units } of axes){
+          for (const { type } of axes){
             if (type !== "space") {
               return throwError(() => new Error(`Can only deal with space axes`))
             }
@@ -175,7 +175,7 @@ export const incVoxelSize = pipe(
       const dataset = datasets[0]
       const { scale, shape } = dataset
       return (scale as number[]).map((v, idx: number) => {
-        const unit = axes[idx].units
+        const unit = axes[idx].unit
         if (!(unit in cvtToNm)) {
           console.warn(`${unit} cannot be converted. Using 1 as default`)
           return 1
diff --git a/frontend/src/state/outputs/effects.ts b/frontend/src/state/outputs/effects.ts
index 3272843e..435e5a95 100644
--- a/frontend/src/state/outputs/effects.ts
+++ b/frontend/src/state/outputs/effects.ts
@@ -31,6 +31,8 @@ export class Effects {
         const { mat4, vec3, quat } = export_nehuba;
         const { processQuatInput } = consts;
 
+        
+
         const rotQuat = processQuatInput(input)
 
         const axis = vec3.fromValues(1, 0, 0)
@@ -43,7 +45,7 @@ export class Effects {
         
         const centralizeMatrix = mat4.fromTranslation(mat4.create(), centerVoxel.map(v => v * -1))
         const decentralizeMatrix = mat4.fromTranslation(mat4.create(), centerVoxel)
-
+        console.log(centerVoxel, centralizeMatrix, decentralizeMatrix)
         mat4.mul(xformMat, centralizeMatrix, xformMat)
 
         mat4.mul(