From 6ea6aecc246bbeca4662aa43c7bbc0f6126f86e0 Mon Sep 17 00:00:00 2001 From: Ahmet Nihat Simsek Date: Thu, 27 Jun 2024 10:41:22 +0200 Subject: [PATCH] Release version of julich brain 3.1 on ebrains --- maps/colin27-jba31-labelled.json | 16 +- maps/colin27-jba31_207-continuous.json | 828 +++++++++++----------- maps/colin27-jba31_227-continuous.json | 908 ++++++++++++------------- maps/fsaverage-jba31-labelled.json | 8 +- maps/mni152-jba31-labelled.json | 16 +- maps/mni152-jba31_207-continuous.json | 828 +++++++++++----------- maps/mni152-jba31_227-continuous.json | 908 ++++++++++++------------- parcellations/julichbrain_v3_0_3.json | 3 +- parcellations/julichbrain_v3_1.json | 20 +- 9 files changed, 1775 insertions(+), 1760 deletions(-) diff --git a/maps/colin27-jba31-labelled.json b/maps/colin27-jba31-labelled.json index cd08b051..4fbdc4df 100644 --- a/maps/colin27-jba31-labelled.json +++ b/maps/colin27-jba31-labelled.json @@ -10,13 +10,13 @@ "@type": "siibra/volume/v0.0.1", "providers": { "nii": { - 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"@prev": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-290" + "@prev": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-290", + "@next": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-310" }, "species": "homo sapiens", "regions": [ diff --git a/parcellations/julichbrain_v3_1.json b/parcellations/julichbrain_v3_1.json index b2075eb8..f6f3a75d 100644 --- a/parcellations/julichbrain_v3_1.json +++ b/parcellations/julichbrain_v3_1.json @@ -1,13 +1,13 @@ { "@id": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-310", "@type": "siibra/parcellation/v0.0.1", - "name": "[PRERELEASE] Julich-Brain Cytoarchitectonic Atlas (v3.1)", + "name": "Julich-Brain Cytoarchitectonic Atlas (v3.1)", "shortName": "Julich-Brain v3.1", "description": "The Julich-Brain Atlas (RRID:SCR_023277) presents in this dataset cytoarchitectonicmaps in several coordinate spaces, such as MNI Colin 27, MNI ICBM 152, andFreeSurfer. These maps originate from peer-reviewed probability maps (PMs) that defineboth cortical and subcortical brain regions. Notably, these probability maps account forthe brain's inter-individual variability by analyzing data from ten post- mortem samples.For a whole-brain parcellation, the available probability maps are combined into amaximum probability map (MPM) by considering for each voxel the probability of allcytoarchitectonic brain regions, and determining the most probable assignment.Continuously evolving, the atlas is regularly updated with new areas. Furthermore, itstands as a reference atlas for the Human Brain Project and is deeply embedded withinthe European research infrastructure platform, EBRAINS. The siibra toolsuite providesan automated access to the Atlas, to speed up your work.", "modality": "cytoarchitecture", "species": "homo sapiens", "@version": { - "name": "3.0.3", + "name": "3.1.0", "@prev": "minds/core/parcellationatlas/v1.0.0/94c1125b-b87e-45e4-901c-00daee7f2579-300" }, "regions": [ @@ -3168,8 +3168,22 @@ ], "ebrains": { "openminds/Dataset": "5a16d948-8d1c-400c-b797-8a7ad29944b2", + "openminds/DatasetVersion": "f1fe19e8-99bd-44bc-9616-a52850680777", "minds/core/species/v1.0.0": "0ea4e6ba-2681-4f7d-9fa9-49b915caaac9", "openminds/Species": "97c070c6-8e1f-4ee8-9d28-18c7945921dd" }, - "publications": [] + "publications": [ + { + "citation": "Amunts, K., Mohlberg, H., Bludau, S., Zilles, K. (2020). Julich-Brain \u2013 A 3D probabilistic atlas of human brain\u2019s cytoarchitecture. Science 369, 988-992", + "url": "https://www.science.org/doi/10.1126/science.abb4588" + }, + { + "citation": "Alan C. Evans, Andrew L. Janke, D. Louis Collins, Sylvain Baillet, Brain templates and atlases, NeuroImage, Volume 62, Issue 2, 2012, Pages 911-922, ISSN 1053-8119, https://doi.org/10.1016/j.neuroimage.2012.01.024.", + "url": "https://doi.org/10.1016/j.neuroimage.2012.01.024" + }, + { + "citation": "Simon B. Eickhoff, Klaas E. Stephan, Hartmut Mohlberg, Christian Grefkes, Gereon R. Fink, Katrin Amunts, Karl Zilles, A new SPM toolbox for combining probabilistic cytoarchitectonic maps and functional imaging data, NeuroImage, Volume 25, Issue 4, 2005, Pages 1325-1335, ISSN 1053-8119, https://doi.org/10.1016/j.neuroimage.2004.12.034.", + "url": "https://doi.org/10.1016/j.neuroimage.2004.12.034" + } + ] }