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Dev #110

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Dev #110

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luiztauffer
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@luiztauffer luiztauffer commented Nov 14, 2024 •
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Bug fixes:

Others:

  • improve handling of user input (cli) when all_data==no
  • vame.report() saves figures to <project_path>/reports/ folder
  • creates VAMEPipeline class that makes it straightforward to run an entire pipeline, and also to pick it up from where it last stopped
  • use https://github.com/neuroinformatics-unit/movement as main data ingestion interface

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codecov bot commented Nov 14, 2024 •
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Codecov Report

Attention: Patch coverage is 89.16155% with 53 lines in your changes missing coverage. Please review.

Files with missing lines Patch % Lines
src/vame/util/cli.py 13.33% 13 Missing ⚠️
src/vame/util/align_egocentrical.py 36.36% 7 Missing ⚠️
src/vame/pipeline.py 93.47% 6 Missing ⚠️
src/vame/analysis/videowriter.py 81.48% 5 Missing ⚠️
src/vame/model/create_training.py 68.75% 5 Missing ⚠️
src/vame/util/auxiliary.py 42.85% 4 Missing ⚠️
src/vame/analysis/gif_creator.py 76.92% 3 Missing ⚠️
src/vame/analysis/community_analysis.py 81.81% 2 Missing ⚠️
src/vame/analysis/pose_segmentation.py 95.23% 2 Missing ⚠️
src/vame/analysis/generative_functions.py 98.46% 1 Missing ⚠️
... and 5 more
Files with missing lines Coverage Δ
src/vame/__init__.py 100.00% <100.00%> (ø)
src/vame/analysis/__init__.py 100.00% <ø> (ø)
src/vame/analysis/tree_hierarchy.py 75.22% <100.00%> (+1.35%) ⬆️
src/vame/initialize_project/__init__.py 100.00% <ø> (ø)
src/vame/io/load_poses.py 100.00% <100.00%> (ø)
src/vame/model/__init__.py 100.00% <ø> (ø)
src/vame/model/dataloader.py 97.14% <ø> (ø)
src/vame/model/evaluate.py 78.28% <ø> (ø)
src/vame/model/rnn_vae.py 79.56% <ø> (ø)
src/vame/schemas/project.py 100.00% <100.00%> (ø)
... and 22 more

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@DrSRMiller DrSRMiller Awaiting requested review from DrSRMiller

@katiekly katiekly Awaiting requested review from katiekly

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