diff --git a/STAR_Protocol_Testing.ipynb b/Notebooks/STAR_Protocol_Testing.ipynb
similarity index 100%
rename from STAR_Protocol_Testing.ipynb
rename to Notebooks/STAR_Protocol_Testing.ipynb
diff --git a/WaveMAP-Paper/__init__.py b/WaveMAP-Paper/__init__.py
new file mode 100644
index 0000000..8b13789
--- /dev/null
+++ b/WaveMAP-Paper/__init__.py
@@ -0,0 +1 @@
+
diff --git a/helper_functions.py b/WaveMAP-Paper/helper_functions.py
similarity index 100%
rename from helper_functions.py
rename to WaveMAP-Paper/helper_functions.py
diff --git a/__init__.py b/__init__.py
deleted file mode 100644
index fb8b0a8..0000000
--- a/__init__.py
+++ /dev/null
@@ -1,2 +0,0 @@
-import numpy as np
-from matplotlib.gridspec import GridSpec
\ No newline at end of file