From 1133c1643de9958fa31ca2034954f259f9223a5a Mon Sep 17 00:00:00 2001 From: brunocontrerasmoreira Date: Fri, 12 Feb 2021 15:12:06 +0000 Subject: [PATCH] fixed files/ --- repeats/README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/repeats/README.md b/repeats/README.md index b6cd653132..0f90e9600e 100644 --- a/repeats/README.md +++ b/repeats/README.md @@ -59,11 +59,11 @@ such as the library **nrTEplants**. The script does not load the resulting annot ./AnnotRedRepeats.py ../files/nrTEplantsJune2020.fna test_Atha_chr4 --bed_file test.bed # consider only repeats with length >= 200 bp -./AnnotRedRepeats.py files/nrTEplantsJune2020.fna Brachypodium_distachyon --cor 4 \ +./AnnotRedRepeats.py ../files/nrTEplantsJune2020.fna Brachypodium_distachyon --cor 4 \ --minlen 200 # add annotated repeats to Ensembl core db and use a different minimap2 binary -./AnnotRedRepeats.py files/nrTEplantsJune2020.fna Brachypodium_distachyon --exe /path/to/minimap2 --cor 4 \ +./AnnotRedRepeats.py ../files/nrTEplantsJune2020.fna Brachypodium_distachyon --exe /path/to/minimap2 --cor 4 \ --host pl1 --user xyz --pw XYZ \ --port 123 --db brachypodium_distachyon_core_49_102 ```