From 806acee6410a9920294f5052d0bc1cac7571c0de Mon Sep 17 00:00:00 2001
From: vinay-ebi <59567245+vinay-ebi@users.noreply.github.com>
Date: Thu, 12 Dec 2024 18:17:06 +0000
Subject: [PATCH] set principle isoform score to 1

---
 .../Production/Pipeline/AttributeAnnotation/LoadAppris.pm    | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/modules/Bio/EnsEMBL/Production/Pipeline/AttributeAnnotation/LoadAppris.pm b/modules/Bio/EnsEMBL/Production/Pipeline/AttributeAnnotation/LoadAppris.pm
index cc7d3485a..364979a06 100644
--- a/modules/Bio/EnsEMBL/Production/Pipeline/AttributeAnnotation/LoadAppris.pm
+++ b/modules/Bio/EnsEMBL/Production/Pipeline/AttributeAnnotation/LoadAppris.pm
@@ -103,11 +103,14 @@ sub load_file {
 
   my $file = $self->param_required('file');
 
-  my $label2code = { 'PRINCIPAL:1'   => [ 'appris', 'principal1' ],
+  my $label2code = { 
+                     'PRINCIPAL:0'   => [ 'appris', 'principal1' ], 
+                     'PRINCIPAL:1'   => [ 'appris', 'principal1' ],
                      'PRINCIPAL:2'   => [ 'appris', 'principal2' ],
                      'PRINCIPAL:3'   => [ 'appris', 'principal3' ],
                      'PRINCIPAL:4'   => [ 'appris', 'principal4' ],
                      'PRINCIPAL:5'   => [ 'appris', 'principal5' ],
+                     'ALTERNATIVE:0' => [ 'appris', 'alternative1' ],
                      'ALTERNATIVE:1' => [ 'appris', 'alternative1' ],
                      'ALTERNATIVE:2' => [ 'appris', 'alternative2' ], };