submission template

.Rbuildignore

@@ -18,3 +18,4 @@
 ^codemeta\.json$
 ^vignettes/emodnet.wfs\.Rmd\.orig$
 ^\.lintr$
+^inst/submission\.md$

README.Rmd

@@ -21,6 +21,7 @@ options(timeout = 2000)
 [![R-CMD-check](https://github.com/EMODnet/emodnet.wfs/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/EMODnet/emodnet.wfs/actions/workflows/R-CMD-check.yaml)
 [![Codecov test coverage](https://codecov.io/gh/EMODnet/emodnet.wfs/branch/main/graph/badge.svg)](https://app.codecov.io/gh/EMODnet/emodnet.wfs/tree/main)
 [![Codecov test coverage](https://codecov.io/gh/EMODnet/emodnet.wfs/graph/badge.svg)](https://app.codecov.io/gh/EMODnet/emodnet.wfs)
+[![DOI](https://zenodo.org/badge/DOI/10.14284/679.svg)](https://doi.org/10.14284/679)
 <!-- badges: end -->
 
 The goal of emodnet.wfs is to allow interrogation of and access to [EMODnet's, European Marine Observation and Data Network, geographic vector data](https://emodnet.ec.europa.eu/en/emodnet-web-service-documentation#inline-nav-3) in R though the [EMODnet Web Feature Services](https://emodnet.ec.europa.eu/en/data). 

README.md

@@ -13,6 +13,7 @@ developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.re
 coverage](https://codecov.io/gh/EMODnet/emodnet.wfs/branch/main/graph/badge.svg)](https://app.codecov.io/gh/EMODnet/emodnet.wfs/tree/main)
 [![Codecov test
 coverage](https://codecov.io/gh/EMODnet/emodnet.wfs/graph/badge.svg)](https://app.codecov.io/gh/EMODnet/emodnet.wfs)
+[![DOI](https://zenodo.org/badge/DOI/10.14284/679.svg)](https://doi.org/10.14284/679)
 <!-- badges: end -->
 
 The goal of emodnet.wfs is to allow interrogation of and access to
@@ -463,9 +464,10 @@ citation(package = "emodnet.wfs")
 #> To cite package 'emodnet.wfs' in publications use:
 #> 
 #>   Krystalli A, Fernández-Bejarano S, Salmon M (????). _emodnet.wfs:
-#>   Access EMODnet Web Feature Service data through R_. R package version
-#>   2.0.1.9001. Integrated data products created under the European
-#>   Marine Observation Data Network (EMODnet) Biology project
+#>   Access EMODnet Web Feature Service data through R_. doi:10.14284/679
+#>   <https://doi.org/10.14284/679>, R package version 2.0.2.9000.
+#>   Integrated data products created under the European Marine
+#>   Observation Data Network (EMODnet) Biology project
 #>   (EASME/EMFF/2017/1.3.1.2/02/SI2.789013), funded by the by the
 #>   European Union under Regulation (EU) No 508/2014 of the European
 #>   Parliament and of the Council of 15 May 2014 on the European Maritime
@@ -476,8 +478,9 @@ citation(package = "emodnet.wfs")
 #>   @Manual{,
 #>     title = {{emodnet.wfs}: Access EMODnet Web Feature Service data through R},
 #>     author = {Anna Krystalli and Salvador Fernández-Bejarano and Maëlle Salmon},
-#>     note = {R package version 2.0.1.9001. Integrated data products created under the European Marine Observation Data Network (EMODnet) Biology project (EASME/EMFF/2017/1.3.1.2/02/SI2.789013), funded by the by the European Union under Regulation (EU) No 508/2014 of the European Parliament and of the Council of 15 May 2014 on the European Maritime and Fisheries Fund},
+#>     note = {R package version 2.0.2.9000. Integrated data products created under the European Marine Observation Data Network (EMODnet) Biology project (EASME/EMFF/2017/1.3.1.2/02/SI2.789013), funded by the by the European Union under Regulation (EU) No 508/2014 of the European Parliament and of the Council of 15 May 2014 on the European Maritime and Fisheries Fund},
 #>     url = {https://github.com/EMODnet/emodnet.wfs},
+#>     doi = {10.14284/679},
 #>   }
 ```
 

inst/CITATION

@@ -10,4 +10,5 @@ bibentry(bibtype = "Manual",
          ),
          year = year,
          note = note,
-         url = "https://github.com/EMODnet/emodnet.wfs")
+         url = "https://github.com/EMODnet/emodnet.wfs",
+         doi = "10.14284/679")

inst/submission.md

@@ -0,0 +1,181 @@
+<!---
+Below, please enter values for (1) submitting author GitHub handle (replacing "@github_handle@); and (2) Repository URL (replacing "https://repourl"). Values for additional package authors may also be specified, replacing "@github_handle1", "@github_handle2" - delete these if not needed. DO NOT DELETE HTML SYMBOLS (everything between "<!" and ">"). Replace only "@github_handle" and "https://repourl". This comment may be deleted once it has been read and understood.
+--->
+
+Submitting Author Name: Maëlle Salmon
+Submitting Author Github Handle: <!--author1-->@maelle<!--end-author1-->
+Other Package Authors Github handles: (comma separated, delete if none) <!--author-others-->@salvafern, @annakrystalli<!--end-author-others-->
+Repository:  <!--repourl-->https://github.com/EMODnet/emodnet.wfs/<!--end-repourl-->
+Version submitted: 2.0.2
+Submission type: <!--submission-type-->Standard<!--end-submission-type-->
+Editor: <!--editor--> TBD <!--end-editor-->
+Reviewers: <!--reviewers-list--> TBD <!--end-reviewers-list-->
+<!--due-dates-list--><!--end-due-dates-list-->
+Archive: TBD
+Version accepted: TBD
+Language: <!--language-->en<!--end-language-->
+
+---
+
+
+
+-   Paste the full DESCRIPTION file inside a code block below:
+
+```
+Package: emodnet.wfs
+Title: Access EMODnet Web Feature Service data through R
+Version: 2.0.2
+Authors@R: c(
+    person("Anna", "Krystalli", , "[email protected]", role = "aut",
+           comment = c(ORCID = "0000-0002-2378-4915")),
+    person("Salvador", "Fernández-Bejarano", , "[email protected]", role = c("aut", "cre"),
+           comment = c(ORCID = "0000-0003-0535-7677")),
+    person("Thomas J", "Webb", , "[email protected]", role = "ctb"),
+    person("European Marine Observation Data Network (EMODnet) Biology project", "European Commission's Directorate - General for Maritime Affairs and Fisheries (DG MARE)", , "[email protected]", role = "cph"),
+    person("VLIZ (VLAAMS INSTITUUT VOOR DE ZEE)", , , "[email protected]", role = "fnd"),
+    person("Maëlle", "Salmon", , "[email protected]", role = "aut",
+           comment = c(ORCID = "0000-0002-2815-0399"))
+  )
+Description: Access and interrogate EMODnet (European Marine Observation and Data Network) 
+    Web Feature Service data through R.
+License: MIT + file LICENSE
+URL: https://emodnet.github.io/emodnet.wfs/,
+    https://github.com/EMODnet/emodnet.wfs
+BugReports: https://github.com/EMODnet/emodnet.wfs/issues
+Depends: 
+    R (>= 3.6.0)
+Imports: 
+    checkmate,
+    cli,
+    dplyr,
+    lifecycle,
+    magrittr,
+    memoise,
+    ows4R (>= 0.4),
+    purrr,
+    rlang,
+    sf,
+    tibble,
+    utils,
+    whoami
+Suggests: 
+    covr,
+    httptest,
+    knitr,
+    mapview,
+    readr,
+    rmarkdown,
+    skimr,
+    testthat (>= 3.1.2),
+    testthis,
+    withr
+Config/Needs/readme: rerddap
+VignetteBuilder: 
+    knitr
+Config/testthat/edition: 3
+Encoding: UTF-8
+LazyData: true
+Roxygen: list(markdown = TRUE)
+RoxygenNote: 7.3.2
+SystemRequirements: C++11, GDAL (>= 2.0.1), GEOS (>= 3.4.0), PROJ (>=
+    4.8.0)
+Remotes: 
+    eblondel/ows4R
+
+```
+
+
+## Scope
+
+- Please indicate which category or categories from our [package fit policies](https://ropensci.github.io/dev_guide/policies.html#package-categories) this package falls under: (Please check an appropriate box below. If you are unsure, we suggest you make a pre-submission inquiry.):
+
+	- [x] data retrieval
+	- [ ] data extraction
+	- [ ] data munging
+	- [ ] data deposition
+    - [ ] data validation and testing
+	- [ ] workflow automation
+	- [ ] version control
+	- [ ] citation management and bibliometrics
+	- [ ] scientific software wrappers
+	- [ ] field and lab reproducibility tools
+	- [ ] database software bindings
+	- [x] geospatial data
+	- [ ] text analysis
+
+- Explain how and why the package falls under these categories (briefly, 1-2 sentences):
+
+The package allow interrogation of and access to EMODnet’s, European Marine Observation and Data Network, geographic vector data.
+
+-   Who is the target audience and what are scientific applications of this package?
+
+The target audience of the package are EMODnet users that might need programmatic access to EMODnet's geographic vector data. 
+The package allows to include EMODnet vector data into scientific pipelines without needing to manually explore and download data from the [EMODnet Geographic Viewer](https://emodnet.ec.europa.eu/geoviewer/).
+The data covers seven disciplinary themes (bathymetry, geology, physics, chemistry, biology, seabed habitats and human activities).
+
+-   Are there other R packages that accomplish the same thing? If so, how does yours differ or meet [our criteria for best-in-category](https://ropensci.github.io/dev_guide/policies.html#overlap)?
+
+No, to our knowledge emodnet.wfs is the only package that provides access to EMODnet data in R though the EMODnet Web Feature
+Services.
+The emodnet.wfs package was developed in collaboration with other EMODnet members.
+
+There are in total three ways to access EMODnet data that complement each other and which we documented in [emodnet.wfs README](https://github.com/EMODnet/emodnet.wfs?tab=readme-ov-file#other-web-services):
+
+- Some EMODnet data are also published in an [ERDDAP
+server](https://erddap.emodnet.eu). One can access these data in R using
+the rOpenSci [rerddap R package](https://docs.ropensci.org/rerddap/).
+
+- This package emodnet.wfs uses [Web Feature
+Services](https://www.ogc.org/standard/wfs/), hence it is limited to
+getting vector data. EMODnet also hosts raster data that can be accessed
+via [Web Coverage Services (WCS)](https://www.ogc.org/standard/wcs/).
+The R package [EMODnetWCS](https://github.com/EMODnet/EMODnetWCS) makes
+these data available in R. We intend to also submit the latter to software review at one point (and we intend to rename it).
+
+-   (If applicable) Does your package comply with our [guidance around _Ethics, Data Privacy and Human Subjects Research_](https://devguide.ropensci.org/policies.html#ethics-data-privacy-and-human-subjects-research)?
+
+N/A
+
+-   If you made a pre-submission inquiry, please paste the link to the corresponding issue, forum post, or other discussion, or @tag the editor you contacted.
+
+-   Explain reasons for any [`pkgcheck` items](https://docs.ropensci.org/pkgcheck/) which your package is unable to pass.
+
+## Technical checks
+
+Confirm each of the following by checking the box.
+
+- [x] I have read the [rOpenSci packaging guide](https://devguide.ropensci.org/building.html).
+- [x] I have read the [author guide](https://devdevguide.netlify.app/authors-guide.html) and I expect to maintain this package for at least 2 years or to find a replacement.
+
+This package:
+
+- [x] does not violate the Terms of Service of any service it interacts with.
+- [x] has a CRAN and OSI accepted license.
+- [x] contains a [README with instructions for installing the development version](https://ropensci.github.io/dev_guide/building.html#readme).
+- [x] includes [documentation with examples for all functions, created with roxygen2](https://ropensci.github.io/dev_guide/building.html#documentation).
+- [x] contains a vignette with examples of its essential functions and uses.
+- [x] has a [test suite](https://ropensci.github.io/dev_guide/building.html#testing).
+- [x] has [continuous integration](https://ropensci.github.io/dev_guide/ci.html), including reporting of test coverage.
+
+## Publication options
+
+- [x] Do you intend for this package to go on CRAN?
+- [ ] Do you intend for this package to go on Bioconductor?
+
+- [ ] Do you wish to submit an Applications Article about your package to [Methods in Ecology and Evolution](http://besjournals.onlinelibrary.wiley.com/hub/journal/10.1111/(ISSN)2041-210X/)? If so:
+
+<details>
+<summary>MEE Options</summary>
+
+- [ ] The package is novel and will be of interest to the broad readership of the journal.
+- [ ] The manuscript describing the package is no longer than 3000 words.
+- [ ] You intend to archive the code for the package in a long-term repository which meets the requirements of the journal (see [MEE's Policy on Publishing Code](http://besjournals.onlinelibrary.wiley.com/hub/journal/10.1111/(ISSN)2041-210X/journal-resources/policy-on-publishing-code.html))
+- (*Scope: Do consider MEE's [Aims and Scope](http://besjournals.onlinelibrary.wiley.com/hub/journal/10.1111/(ISSN)2041-210X/aims-and-scope/read-full-aims-and-scope.html) for your manuscript. We make no guarantee that your manuscript will be within MEE scope.*)
+- (*Although not required, we strongly recommend having a full manuscript prepared when you submit here.*)
+- (*Please do not submit your package separately to Methods in Ecology and Evolution*)
+
+</details>
+
+## Code of conduct
+
+- [x] I agree to abide by [rOpenSci's Code of Conduct](https://ropensci.org/code-of-conduct/) during the review process and in maintaining my package should it be accepted.