From d8715eb38f89d64cf26f9227f141d2067c4ec54f Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Ma=C3=ABlle=20Salmon?= Date: Thu, 4 Apr 2024 10:17:38 +0200 Subject: [PATCH] docs: re-knit README --- README.md | 33 ++++++++++++++++----------------- 1 file changed, 16 insertions(+), 17 deletions(-) diff --git a/README.md b/README.md index a1f3569..caa6cb1 100644 --- a/README.md +++ b/README.md @@ -99,7 +99,7 @@ emodnet_get_wfs_info(service = "biology") #> ✔ WFS client created successfully #> ℹ Service: "https://geo.vliz.be/geoserver/Emodnetbio/wfs" #> ℹ Version: "2.0.0" -#> # A tibble: 38 × 9 +#> # A tibble: 35 × 9 #> # Rowwise: #> data_source service_name service_url layer_name title abstract class format #> @@ -109,11 +109,11 @@ emodnet_get_wfs_info(service = "biology") #> 4 emodnet_wfs biology https://geo.… Species_g… EMOD… "This d… WFSF… sf #> 5 emodnet_wfs biology https://geo.… Species_g… EMOD… "This d… WFSF… sf #> 6 emodnet_wfs biology https://geo.… Species_g… EMOD… "This d… WFSF… sf -#> 7 emodnet_wfs biology https://geo.… Species_g… EMOD… "This d… WFSF… sf -#> 8 emodnet_wfs biology https://geo.… mediseh_h… EMOD… "Haloph… WFSF… sf +#> 7 emodnet_wfs biology https://geo.… mediseh_h… EMOD… "Haloph… WFSF… sf +#> 8 emodnet_wfs biology https://geo.… mediseh_m… EMOD… "Maërl … WFSF… sf #> 9 emodnet_wfs biology https://geo.… mediseh_m… EMOD… "Maërl … WFSF… sf -#> 10 emodnet_wfs biology https://geo.… mediseh_m… EMOD… "Maërl … WFSF… sf -#> # ℹ 28 more rows +#> 10 emodnet_wfs biology https://geo.… mediseh_p… EMOD… "This d… WFSF… sf +#> # ℹ 25 more rows #> # ℹ 1 more variable: layer_namespace ``` @@ -121,7 +121,7 @@ or you can pass a wfs client object. ``` r emodnet_get_wfs_info(wfs_bio) -#> # A tibble: 38 × 9 +#> # A tibble: 35 × 9 #> # Rowwise: #> data_source service_name service_url layer_name title abstract class format #> @@ -131,11 +131,11 @@ emodnet_get_wfs_info(wfs_bio) #> 4 emodnet_wfs biology https://geo.… Species_g… EMOD… "This d… WFSF… sf #> 5 emodnet_wfs biology https://geo.… Species_g… EMOD… "This d… WFSF… sf #> 6 emodnet_wfs biology https://geo.… Species_g… EMOD… "This d… WFSF… sf -#> 7 emodnet_wfs biology https://geo.… Species_g… EMOD… "This d… WFSF… sf -#> 8 emodnet_wfs biology https://geo.… mediseh_h… EMOD… "Haloph… WFSF… sf +#> 7 emodnet_wfs biology https://geo.… mediseh_h… EMOD… "Haloph… WFSF… sf +#> 8 emodnet_wfs biology https://geo.… mediseh_m… EMOD… "Maërl … WFSF… sf #> 9 emodnet_wfs biology https://geo.… mediseh_m… EMOD… "Maërl … WFSF… sf -#> 10 emodnet_wfs biology https://geo.… mediseh_m… EMOD… "Maërl … WFSF… sf -#> # ℹ 28 more rows +#> 10 emodnet_wfs biology https://geo.… mediseh_p… EMOD… "This d… WFSF… sf +#> # ℹ 25 more rows #> # ℹ 1 more variable: layer_namespace ``` @@ -380,7 +380,7 @@ library(rerddap) erddap_url <- "https://erddap.emodnet.eu/erddap/" rerddap::ed_datasets(url = erddap_url) -#> # A tibble: 9 × 16 +#> # A tibble: 8 × 16 #> griddap Subset tabledap Make.A.Graph wms files Title Summary FGDC ISO.19115 #> #> 1 "" "http… https:/… https://erd… "" "" * Th… "This … "" "" @@ -388,10 +388,9 @@ rerddap::ed_datasets(url = erddap_url) #> 3 "" "" https:/… https://erd… "" "htt… EMOD… "The d… "" "" #> 4 "" "http… https:/… https://erd… "" "htt… EMOD… "The d… "htt… "https:/… #> 5 "" "" https:/… https://erd… "" "htt… Pres… "The p… "htt… "https:/… -#> 6 "" "" https:/… https://erd… "" "htt… Pres… "The p… "htt… "https:/… -#> 7 "" "" https:/… https://erd… "" "" PSMS… "Perma… "" "" -#> 8 "" "" https:/… https://erd… "" "htt… PSMS… "Perma… "" "" -#> 9 "" "http… https:/… https://erd… "" "htt… TAO/… "This … "htt… "https:/… +#> 6 "" "" https:/… https://erd… "" "" PSMS… "Perma… "" "" +#> 7 "" "" https:/… https://erd… "" "htt… PSMS… "Perma… "" "" +#> 8 "" "http… https:/… https://erd… "" "htt… TAO/… "This … "htt… "https:/… #> # ℹ 6 more variables: Info , Background.Info , RSS , #> # Email , Institution , Dataset.ID @@ -416,7 +415,7 @@ rerddap::ed_search(query = "vessel density", url = erddap_url) #> 15 Vessel traffic density, 2019, Tug and Towing EMODPACE_VD_07_Tug #> 16 Vessel traffic density, 2019, Unknown EMODPACE_VD_12_Unk… -human_activities_data_info <- rerddap::info(datasetid = 'humanactivities_9f8a_3389_f08a', url = erddap_url) +human_activities_data_info <- rerddap::info(datasetid = "humanactivities_9f8a_3389_f08a", url = erddap_url) human_activities_data_info #> humanactivities_9f8a_3389_f08a #> Base URL: https://erddap.emodnet.eu/erddap @@ -429,7 +428,7 @@ human_activities_data_info #> vd: #> Units: seconds -year_2020_gridded_data <- griddap(datasetx = human_activities_data_info, time = c('2020-03-18', '2020-03-19')) +year_2020_gridded_data <- griddap(datasetx = human_activities_data_info, time = c("2020-03-18", "2020-03-19")) #> info() output passed to x; setting base url to: https://erddap.emodnet.eu/erddap head(year_2020_gridded_data$data) #> x y time vd