diff --git a/pkgdown.yml b/pkgdown.yml index d83f847..15738ff 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -5,7 +5,7 @@ articles: articles/ecql_filtering: ecql_filtering.html emodnet.wfs: emodnet.wfs.html articles/request-params: request-params.html -last_built: 2024-11-07T13:33Z +last_built: 2024-11-12T11:53Z urls: reference: https://emodnet.github.io/emodnet.wfs/reference article: https://emodnet.github.io/emodnet.wfs/articles diff --git a/reference/emodnet_get_layers.html b/reference/emodnet_get_layers.html index b10dd07..7c8e525 100644 --- a/reference/emodnet_get_layers.html +++ b/reference/emodnet_get_layers.html @@ -145,12 +145,54 @@

Big downloads

Examples

- 
if (FALSE) { # interactive()
-# Layers as character vector
+    
# Layers as character vector
 emodnet_get_layers(
   service = "biology",
   layers = c("mediseh_zostera_m_pnt", "mediseh_posidonia_nodata")
 )
+#> Loading ISO 19139 XML schemas...
+#> Loading ISO 19115 codelists...
+#> ✔ WFS client created successfully
+#> ℹ Service: "https://geo.vliz.be/geoserver/Emodnetbio/wfs"
+#> ℹ Version: "2.0.0"
+#> $mediseh_zostera_m_pnt
+#> Simple feature collection with 54 features and 3 fields
+#> Geometry type: POINT
+#> Dimension:     XY
+#> Bounding box:  xmin: -4.167154 ymin: 33.07783 xmax: 15.35766 ymax: 45.72451
+#> Geodetic CRS:  WGS 84
+#> First 10 features:
+#>                      gml_id id country                   the_geom
+#> 1   mediseh_zostera_m_pnt.1  0  Spagna  POINT (-2.61314 36.71681)
+#> 2   mediseh_zostera_m_pnt.2  0  Spagna POINT (-3.846598 36.75127)
+#> 3   mediseh_zostera_m_pnt.3  0  Spagna POINT (-3.957785 36.72266)
+#> 4   mediseh_zostera_m_pnt.4  0  Spagna POINT (-4.039712 36.74217)
+#> 5   mediseh_zostera_m_pnt.5  0  Spagna POINT (-4.100182 36.72331)
+#> 6   mediseh_zostera_m_pnt.6  0  Spagna POINT (-4.167154 36.71226)
+#> 7   mediseh_zostera_m_pnt.7  0  Spagna POINT (-1.268366 37.55796)
+#> 8   mediseh_zostera_m_pnt.8  0 Francia   POINT (4.84864 43.37637)
+#> 9   mediseh_zostera_m_pnt.9  0  Italia  POINT (13.71831 45.70017)
+#> 10 mediseh_zostera_m_pnt.10  0  Italia  POINT (13.16378 45.72451)
+#> 
+#> $mediseh_posidonia_nodata
+#> Simple feature collection with 465 features and 3 fields
+#> Geometry type: MULTICURVE
+#> Dimension:     XY
+#> Bounding box:  xmin: -2.1798 ymin: 30.26623 xmax: 34.60767 ymax: 45.47668
+#> Geodetic CRS:  WGS 84
+#> First 10 features:
+#>                         gml_id id         km                       the_geom
+#> 1   mediseh_posidonia_nodata.1  0 291.503233 MULTICURVE (LINESTRING (27....
+#> 2   mediseh_posidonia_nodata.2  0  75.379502 MULTICURVE (LINESTRING (23....
+#> 3   mediseh_posidonia_nodata.3  0  38.627764 MULTICURVE (LINESTRING (22....
+#> 4   mediseh_posidonia_nodata.4  0 110.344802 MULTICURVE (LINESTRING (19....
+#> 5  mediseh_posidonia_nodata.13  0  66.997461 MULTICURVE (LINESTRING (9.1...
+#> 6  mediseh_posidonia_nodata.14  0  18.090640 MULTICURVE (LINESTRING (9.7...
+#> 7  mediseh_posidonia_nodata.15  0  16.618978 MULTICURVE (LINESTRING (9.8...
+#> 8  mediseh_posidonia_nodata.16  0   1.913773 MULTICURVE (LINESTRING (10....
+#> 9  mediseh_posidonia_nodata.83  0   2.173447 MULTICURVE (LINESTRING (15....
+#> 10 mediseh_posidonia_nodata.84  0   2.817453 MULTICURVE (LINESTRING (15....
+#> 
 
 
 # Usage of cql_filter
@@ -159,12 +201,36 @@ 
Examples  layers = "mediseh_zostera_m_pnt",
   cql_filter = "country = 'Francia'"
 )
+#> ✔ WFS client created successfully
+#> ℹ Service: "https://geo.vliz.be/geoserver/Emodnetbio/wfs"
+#> ℹ Version: "2.0.0"
+#> $mediseh_zostera_m_pnt
+#> Simple feature collection with 1 feature and 3 fields
+#> Geometry type: POINT
+#> Dimension:     XY
+#> Bounding box:  xmin: 4.84864 ymin: 43.37637 xmax: 4.84864 ymax: 43.37637
+#> Geodetic CRS:  WGS 84
+#>                    gml_id id country                 the_geom
+#> 1 mediseh_zostera_m_pnt.8  0 Francia POINT (4.84864 43.37637)
+#> 
 # Usage of vendor parameter
 emodnet_get_layers(
   service = "biology",
   layers = "mediseh_zostera_m_pnt",
   count = 1
 )
+#> ✔ WFS client created successfully
+#> ℹ Service: "https://geo.vliz.be/geoserver/Emodnetbio/wfs"
+#> ℹ Version: "2.0.0"
+#> $mediseh_zostera_m_pnt
+#> Simple feature collection with 1 feature and 3 fields
+#> Geometry type: POINT
+#> Dimension:     XY
+#> Bounding box:  xmin: -2.61314 ymin: 36.71681 xmax: -2.61314 ymax: 36.71681
+#> Geodetic CRS:  WGS 84
+#>                    gml_id id country                  the_geom
+#> 1 mediseh_zostera_m_pnt.1  0  Spagna POINT (-2.61314 36.71681)
+#> 
 
 # Usage of csv output
 data <- emodnet_get_layers(
@@ -172,8 +238,99 @@ 
Examples    layers = "abiotic_observations",
     outputFormat = "CSV"
 )
+#> ✔ WFS client created successfully
+#> ℹ Service: "https://geo.vliz.be/geoserver/Dataportal/wfs"
+#> ℹ Version: "2.0.0"
+#> Rows: 1000000 Columns: 37
+#> ── Column specification ────────────────────────────────────────────────────────
+#> Delimiter: ","
+#> chr  (17): FID, value, datatype, season, parametername, parameterunit, datap...
+#> dbl  (11): id, latitude, longitude, depth, standardparameterid, dataprovider...
+#> lgl   (8): aphiaid, lod, loq, class, classunit, classcode, dateprecision, sc...
+#> dttm  (1): datetime
+#> 
+#> ℹ Use `spec()` to retrieve the full column specification for this data.
+#> ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
 str(data[["abiotic_observations"]])
-}
+#> spc_tbl_ [1,000,000 × 37] (S3: spec_tbl_df/tbl_df/tbl/data.frame)
+#>  $ FID                : chr [1:1000000] "abiotic_observations.fid-33b119e7_193203857cf_-d5f" "abiotic_observations.fid-33b119e7_193203857cf_-d5e" "abiotic_observations.fid-33b119e7_193203857cf_-d5d" "abiotic_observations.fid-33b119e7_193203857cf_-d5c" ...
+#>  $ id                 : num [1:1000000] 1.03e+09 1.03e+09 1.03e+09 1.03e+09 1.03e+09 ...
+#>  $ aphiaid            : logi [1:1000000] NA NA NA NA NA NA ...
+#>  $ latitude           : num [1:1000000] 51.3 51.3 51.3 51.3 51.3 ...
+#>  $ longitude          : num [1:1000000] 4.3 4.3 4.3 4.3 4.3 ...
+#>  $ depth              : num [1:1000000] -6.78 -6.78 -6.78 -6.78 -6.78 ...
+#>  $ datetime           : POSIXct[1:1000000], format: "2008-06-25 21:33:00" "2008-06-25 21:33:00" ...
+#>  $ value              : chr [1:1000000] "-" "-" "-" "-" ...
+#>  $ lod                : logi [1:1000000] NA NA NA NA NA NA ...
+#>  $ loq                : logi [1:1000000] NA NA NA NA NA NA ...
+#>  $ standardparameterid: num [1:1000000] 1045 1045 1045 1045 1045 ...
+#>  $ dataproviderid     : num [1:1000000] 6 6 6 6 6 6 6 6 6 6 ...
+#>  $ imisdatasetid      : num [1:1000000] 5242 5242 5242 5242 5242 ...
+#>  $ dataficheid        : num [1:1000000] 64 64 64 64 64 64 64 64 64 64 ...
+#>  $ seriesid           : num [1:1000000] 2032 2032 2032 2032 2032 ...
+#>  $ datatype           : chr [1:1000000] "NC" "NC" "NC" "NC" ...
+#>  $ class              : logi [1:1000000] NA NA NA NA NA NA ...
+#>  $ classunit          : logi [1:1000000] NA NA NA NA NA NA ...
+#>  $ classcode          : logi [1:1000000] NA NA NA NA NA NA ...
+#>  $ season             : chr [1:1000000] "summer" "summer" "summer" "summer" ...
+#>  $ parametername      : chr [1:1000000] "Temperatuur in graden celcius in water" "Temperatuur in graden celcius in water" "Temperatuur in graden celcius in water" "Temperatuur in graden celcius in water" ...
+#>  $ parameterunit      : chr [1:1000000] "graden celcius" "graden celcius" "graden celcius" "graden celcius" ...
+#>  $ dataprovider       : chr [1:1000000] "MOW MT - Maritieme Toegang" "MOW MT - Maritieme Toegang" "MOW MT - Maritieme Toegang" "MOW MT - Maritieme Toegang" ...
+#>  $ datasettitle       : chr [1:1000000] "Continuous measurements in Deurganckdok" "Continuous measurements in Deurganckdok" "Continuous measurements in Deurganckdok" "Continuous measurements in Deurganckdok" ...
+#>  $ datafichetitle     : chr [1:1000000] "P-FC-V-003 - Temperatuur - Continu" "P-FC-V-003 - Temperatuur - Continu" "P-FC-V-003 - Temperatuur - Continu" "P-FC-V-003 - Temperatuur - Continu" ...
+#>  $ stationname        : chr [1:1000000] "Boei 97 - Bottom" "Boei 97 - Bottom" "Boei 97 - Bottom" "Boei 97 - Bottom" ...
+#>  $ gid                : num [1:1000000] 7 7 7 7 7 7 7 7 7 7 ...
+#>  $ seasonid           : num [1:1000000] 3 3 3 3 3 3 3 3 3 3 ...
+#>  $ unit               : chr [1:1000000] "graden celcius" "graden celcius" "graden celcius" "graden celcius" ...
+#>  $ category           : chr [1:1000000] "temperatuur" "temperatuur" "temperatuur" "temperatuur" ...
+#>  $ the_geom           : chr [1:1000000] "POINT (51.2925 4.30243)" "POINT (51.2925 4.30243)" "POINT (51.2925 4.30243)" "POINT (51.2925 4.30243)" ...
+#>  $ valuesign          : chr [1:1000000] "=" "=" "=" "=" ...
+#>  $ dateprecision      : logi [1:1000000] NA NA NA NA NA NA ...
+#>  $ standard_name      : chr [1:1000000] "BODC" "BODC" "BODC" "BODC" ...
+#>  $ externalid         : chr [1:1000000] "TEMPPP01" "TEMPPR01" "TEMPPP01" "TEMPPR01" ...
+#>  $ external_name      : chr [1:1000000] "Temperature of the water body by YSI in-situ oxygen and temperature probe" "Temperature of the water body" "Temperature of the water body by YSI in-situ oxygen and temperature probe" "Temperature of the water body" ...
+#>  $ scientificname     : logi [1:1000000] NA NA NA NA NA NA ...
+#>  - attr(*, "spec")=
+#>   .. cols(
+#>   ..   FID = col_character(),
+#>   ..   id = col_double(),
+#>   ..   aphiaid = col_logical(),
+#>   ..   latitude = col_double(),
+#>   ..   longitude = col_double(),
+#>   ..   depth = col_double(),
+#>   ..   datetime = col_datetime(format = ""),
+#>   ..   value = col_character(),
+#>   ..   lod = col_logical(),
+#>   ..   loq = col_logical(),
+#>   ..   standardparameterid = col_double(),
+#>   ..   dataproviderid = col_double(),
+#>   ..   imisdatasetid = col_double(),
+#>   ..   dataficheid = col_double(),
+#>   ..   seriesid = col_double(),
+#>   ..   datatype = col_character(),
+#>   ..   class = col_logical(),
+#>   ..   classunit = col_logical(),
+#>   ..   classcode = col_logical(),
+#>   ..   season = col_character(),
+#>   ..   parametername = col_character(),
+#>   ..   parameterunit = col_character(),
+#>   ..   dataprovider = col_character(),
+#>   ..   datasettitle = col_character(),
+#>   ..   datafichetitle = col_character(),
+#>   ..   stationname = col_character(),
+#>   ..   gid = col_double(),
+#>   ..   seasonid = col_double(),
+#>   ..   unit = col_character(),
+#>   ..   category = col_character(),
+#>   ..   the_geom = col_character(),
+#>   ..   valuesign = col_character(),
+#>   ..   dateprecision = col_logical(),
+#>   ..   standard_name = col_character(),
+#>   ..   externalid = col_character(),
+#>   ..   external_name = col_character(),
+#>   ..   scientificname = col_logical()
+#>   .. )
+#>  - attr(*, "problems")=<externalptr>