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reat.yml
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reat.yml
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name: REAT
channels:
- bioconda
- conda-forge
- defaults
- anaconda
dependencies:
- python>=3.9,<3.11
- appdirs=1.4.4
- attrs=22.1.0
- biopython=1.79
- brotlipy=0.7.0
- bumpversion=0.5.3
- certifi=2022.9.24
- cffi=1.15.1
- charset-normalizer=2.1.1
- click=8.1.3
- click-log=0.4.0
- colorama=0.4.5
- conda=22.9.0
- conda-package-handling=1.9.0
- ConfigArgParse=1.5.3
- cryptography=37.0.1
- Cython=0.29.32
- datrie=0.8.2
- docutils=0.19
- drmaa=0.7.9
- exceptiongroup=1.0.0rc9
- filelock=3.8.0
- gitdb=4.0.9
- GitPython=3.1.29
- greenlet=1.1.3.post0
- hypothesis=6.56.2
- idna=3.4
- iniconfig=1.1.1
- joblib=1.2.0
- jsonschema=3.2.0
- libmambapy=0.27.0
- marshmallow=3.14.1
- marshmallow-dataclass=8.5.3
- msgpack-python==1.0.4
- nbformat=5.7.0
- ncls=0.0.65
- networkx=2.8.7
- numpy=1.23.3
- packaging=21.3
- pandas=1.5.0
- pip=22.2.2
- pluggy=1.0.0
- psutil=5.9.2
- PuLP=2.6.0
- py=1.11.0
- pycosat=0.6.3
- pycparser=2.21
- pyfaidx=0.5.9.5
- pyOpenSSL=22.0.0
- pyparsing=3.0.9
- pyrsistent=0.18.1
- pysam=0.19.1
- PySocks=1.7.1
- pytest=7.1.3
- python-dateutil=2.8.2
- python-rapidjson=1.9
- pytz=2022.4
- PyVCF3=1.0.3
- PyYAML=6.0.1
- requests=2.28.1
- scikit-learn=1.1.2
- scipy=1.11.1
- setuptools=65.4.1
- six=1.16.0
- smart-open=6.2.0
- snakemake=6.15.5
- sortedcontainers=2.4.0
- SQLAlchemy=1.4.41
- SQLAlchemy-Utils=0.38.3
- stopit=1.1.2
- tabulate=0.9.0
- threadpoolctl=3.1.0
- toml=0.10.2
- tomli=2.0.1
- toolz=0.12.0
- toposort=1.7
- tqdm=4.64.1
- traitlets=5.4.0
- typeguard=2.13.3
- typing_extensions=4.4.0
- wheel=0.37.1
- wrapt=1.14.1
- samtools>=1.11
- htslib>=1.11
- prodigal==2.6.3
- diamond==2.0.11
- portcullis==1.2.4
- git=2.26.0
- gnuplot=5.4.1
- libjpeg-turbo=2.1.0
- bioawk=1.0
- seqkit=0.16.1
- stringtie=2.1.5
- hisat2=2.2.1
- minimap2=2.18
- gmap=2021.03.08
- star=2.7.8a
- spaln>=2.4.3
- scallop=0.10.5
- gffread=0.12.1
- seqtk=1.3
- transdecoder=5.5.0
- blast>=2.9.0
- scallop-lr=0.9.2
- bedtools=2.30.0
- ucsc-wigtobigwig=377
- glimmerhmm=3.0.4
- snap=2013_11_29
- codingquarry=2.0
- augustus=3.4.0
- evidencemodeler=1.1.1
- miniprot=0.12