From f5e5504ddcdd7fb00c31c6c5e1ee9c2b7d62d905 Mon Sep 17 00:00:00 2001
From: Gemy Kaithakottil <gemygk@gmail.com>
Date: Tue, 14 May 2024 09:01:21 +0100
Subject: [PATCH] fix: add solver to gh workflow

---
 .github/workflows/python-package.yml | 8 +++++---
 1 file changed, 5 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml
index ae06734e..4b96f82f 100644
--- a/.github/workflows/python-package.yml
+++ b/.github/workflows/python-package.yml
@@ -12,6 +12,7 @@ jobs:
     strategy:
       matrix:
         python-version: [ 3.7, 3.8, 3.9 ]
+        solver: ["classic", "libmamba"]
         os: [ubuntu-latest, macos-latest]
     steps:
     - name: Install system development tools
@@ -48,21 +49,22 @@ jobs:
     - uses: conda-incubator/setup-miniconda@v2
       with:
         python-version: ${{ matrix.python-version }}
-        repo-token: ${{ secrets.GITHUB_TOKEN }}
+        conda-solver: ${{ matrix.solver }}
+        # repo-token: ${{ secrets.GITHUB_TOKEN }}
         miniconda-version: "latest"
         environment-file: ./environment.yml
         mamba-version: "*"
         use-mamba: true
         channels: conda-forge, defaults
         use-only-tar-bz2: true  # IMPORTANT: This needs to be set for caching to work properly!
-        # auto-update-conda: false
+        auto-update-conda: true
         activate-environment: "mikado2"
         # auto-activate-base: false
     - name: Install dependencies
       run: |
         gcc --help
         pip install -r requirements.txt
-        python -c "import pysam; print(pysam.__version__)"	
+        python -c "import pysam; print(pysam.__version__)"
         pip install Cython pytest-cov
         python setup.py develop
     - name: Test light