diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml index 4e77a3ef..ac5da10d 100644 --- a/.github/workflows/python-package.yml +++ b/.github/workflows/python-package.yml @@ -47,14 +47,18 @@ jobs: path: ~/conda_pkgs_dir key: ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('./environment.yml') }} - - uses: conda-incubator/setup-miniconda@v2 + - uses: actions/checkout@v4 + - uses: conda-incubator/setup-miniconda@v3 + id: setup-miniconda + continue-on-error: true with: + auto-update-conda: true python-version: ${{ matrix.python-version }} repo-token: ${{ secrets.GITHUB_TOKEN }} miniconda-version: "latest" environment-file: ./environment.yml mamba-version: "*" - use-mamba: false + use-mamba: true # channels: conda-forge, defaults channels: bioconda, conda-forge, defaults, anaconda use-only-tar-bz2: true # IMPORTANT: This needs to be set for caching to work properly!