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cluster.json
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cluster.json
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{
"__default__": {
"partition": "ei-medium,ei-long",
"memory": "16000",
"c": "4",
"J": "SkimSeqQC",
"time": "04:00:00"
},
"fastp": {
"J": "fastp",
"c": "2"
},
"fastp_trimmed_reads": {
"J": "fastp_trimmed_reads",
"c": "2"
},
"generate_samplesheet": {
"J": "generate_samplesheet",
"c": "1",
"time": "00:30:00",
"partition": "ei-short,ei-medium,ei-long"
},
"bbduk_gDNA": {
"J": "bbduk_gDNA",
"memory": "32000",
"time": "02:00:00"
},
"bbduk_cDNA": {
"J": "bbduk_cDNA",
"memory": "32000",
"time": "02:00:00"
},
"rku_gDNA": {
"J": "rku_gDNA",
"c": "1"
},
"rku_cDNA": {
"J": "rku_cDNA",
"c": "1"
},
"fastqc": {
"J": "fastqc",
"c": "2"
},
"bbmerge": {
"J": "bbmerge",
"memory": "32000",
"time": "02:00:00"
},
"spades": {
"J": "spades",
"c": "8",
"memory": "64000",
"time": "48:00:00"
},
"quast": {
"J": "quast",
"c": 2
},
"busco3_genome": {
"J": "busco_genome",
"C": "4"
},
"busco3_transcriptome": {
"J": "busco_transcriptome",
"C": "4"
},
"busco3_transdecoder": {
"J": "busco_transdecoder",
"c": "4"
},
"trinity": {
"J": "trinity",
"c": "8",
"memory": "70G",
"time": "48:00:00"
},
"cdhit": {
"J": "cdhit",
"c": "4",
"memory": "20G",
"time": "04:00:00"
},
"transdecoder_LongOrfs": {
"J": "transdecoder-LongOrfs",
"c": "1",
"time": "12:00:00"
},
"transdecoder_Predict": {
"J": "transdecoder-Predict",
"c": "1",
"time": "12:00:00"
},
"multiqc": {
"J": "multiqc",
"c": "1"
},
"make_centrifuge_samplesheet": {
"J": "samplesheet_centrifuge",
"c": "1",
"time": "00:30:00"
},
"make_centrifuge_NT_samplesheet": {
"J": "samplesheet_centrifuge_NT",
"c": "1",
"time": "00:30:00"
},
"centrifuge_gDNA": {
"J": "centrifuge_gDNA",
"c": "16",
"memory": "120G",
"time": "96:00:00"
},
"centrifuge_cDNA": {
"J": "centrifuge_cDNA",
"c": "16",
"memory": "120G",
"time": "96:00:00"
},
"centrifuge_NT_gDNA": {
"J": "centrifuge_NT_gDNA",
"c": "16",
"memory": "550G",
"time": "144:00:00",
"partition": "ei-largemem"
},
"centrifuge_NT_cDNA": {
"J": "centrifuge_NT_cDNA",
"c": "16",
"memory": "550G",
"time": "144:00:00",
"partition": "ei-largemem"
},
"centrifuge_kreport": {
"J": "centrifuge_kreport",
"c": "1",
"memory": "20G"
},
"centrifuge_NT_kreport": {
"J": "centrifuge_NT_kreport",
"c": "1",
"memory": "30G",
"time": "12:00:00"
},
"kraken2": {
"J": "kraken2",
"c": "12",
"memory": "120G",
"time": "08:00:00"
},
"recentrifuge_centrifuge": {
"J": "recentrifuge_centrifuge",
"c": "4",
"memory": "48000",
"time": "2:00:00"
},
"recentrifuge_centrifuge_NT": {
"J": "recentrifuge_centrifuge_NT",
"c": "4",
"time": "2:00:00",
"memory": "48000"
},
"recentrifuge_kraken": {
"J": "recentrifuge_kraken",
"c": "4",
"time": "2:00:00",
"memory": "48000"
},
"barrnap_gDNA": {
"J": "barrnap_gDNA",
"c": "4",
"memory": "8000"
},
"barrnap_cDNA": {
"J": "barrnap_cDNA",
"c": "4",
"memory": "8000"
},
"pr2_blast_gDNA": {
"J": "pr2_blast_gDNA",
"c": "2"
},
"pr2_blast_cDNA": {
"J": "pr2_blast",
"c": "2"
},
"diamond_transcriptome": {
"J": "diamond_transcriptome",
"c": "8",
"memory": "30G",
"time": "24:00:00"
},
"minimap2_gDNA": {
"J": "minimap2",
"c": "4",
"time": "12:00:00"
},
"hisat2_build": {
"J": "hisat2_build",
"c": "1"
},
"hisat2": {
"J": "hisat2",
"c": "4"
},
"map_taxids": {
"J": "map_taxids",
"c": "1"
}
}