From 54d8ed2fb9b0886983a681db182ebbbec6aa3846 Mon Sep 17 00:00:00 2001 From: nkumar2 Date: Fri, 10 Feb 2023 09:14:55 +0000 Subject: [PATCH] mock api in genotypesview component --- package-lock.json | 21 + package.json | 1 + src/mocks/handlers.js | 37 +- src/test/GenotypeView.test.js | 9 - src/test/GenotypesView.test.js | 21 + src/test/test_data/GenotypesTableData.js | 91 - src/test/test_data/GenotypesViewData.js | 2609 +++++++++++++++++++++- 7 files changed, 2676 insertions(+), 113 deletions(-) delete mode 100644 src/test/GenotypeView.test.js create mode 100644 src/test/GenotypesView.test.js diff --git a/package-lock.json b/package-lock.json index e88394a..82b2246 100644 --- a/package-lock.json +++ b/package-lock.json @@ -21,6 +21,7 @@ "@babel/preset-react": "^7.0.0", "@testing-library/jest-dom": "^5.16.5", "@testing-library/react": "^12.1.5", + "@testing-library/user-event": "^14.4.3", "babel-loader": "^8.0.2", "css-loader": "^6.7.3", "jest": "^29.4.1", @@ -2675,6 +2676,19 @@ "react-dom": "<18.0.0" } }, + "node_modules/@testing-library/user-event": { + "version": "14.4.3", + "resolved": "https://registry.npmjs.org/@testing-library/user-event/-/user-event-14.4.3.tgz", + "integrity": "sha512-kCUc5MEwaEMakkO5x7aoD+DLi02ehmEM2QCGWvNqAS1dV/fAvORWEjnjsEIvml59M7Y5kCkWN6fCCyPOe8OL6Q==", + "dev": true, + "engines": { + "node": ">=12", + "npm": ">=6" + }, + "peerDependencies": { + "@testing-library/dom": ">=7.21.4" + } + }, "node_modules/@tootallnate/once": { "version": "2.0.0", "resolved": "https://registry.npmjs.org/@tootallnate/once/-/once-2.0.0.tgz", @@ -14470,6 +14484,13 @@ "@types/react-dom": "<18.0.0" } }, + "@testing-library/user-event": { + "version": "14.4.3", + "resolved": "https://registry.npmjs.org/@testing-library/user-event/-/user-event-14.4.3.tgz", + "integrity": "sha512-kCUc5MEwaEMakkO5x7aoD+DLi02ehmEM2QCGWvNqAS1dV/fAvORWEjnjsEIvml59M7Y5kCkWN6fCCyPOe8OL6Q==", + "dev": true, + "requires": {} + }, "@tootallnate/once": { "version": "2.0.0", "resolved": "https://registry.npmjs.org/@tootallnate/once/-/once-2.0.0.tgz", diff --git a/package.json b/package.json index f3ad296..5812a37 100644 --- a/package.json +++ b/package.json @@ -20,6 +20,7 @@ "@babel/preset-react": "^7.0.0", "@testing-library/jest-dom": "^5.16.5", "@testing-library/react": "^12.1.5", + "@testing-library/user-event": "^14.4.3", "babel-loader": "^8.0.2", "css-loader": "^6.7.3", "jest": "^29.4.1", diff --git a/src/mocks/handlers.js b/src/mocks/handlers.js index fe51343..e38e666 100644 --- a/src/mocks/handlers.js +++ b/src/mocks/handlers.js @@ -1,16 +1,29 @@ -import { rest } from 'msw' +import {rest} from 'msw' +import { genotypes_view_test_consequences_data, genotypes_view_test_species_data, genotypes_view_test_studies_data, + genotypes_view_test_variants_data } from "../test/test_data/GenotypesTableData" export const handlers = [ - rest.post('/login', (req, res, ctx) => { - const { username } = req.body + rest.get('https://rest.ensembl.org/info/variation/consequence_types', (req, res, ctx) => { + return res( + ctx.json(genotypes_view_test_consequences_data), + ) + }), - return res( - ctx.json({ - id: 'f79e82e8-c34a-4dc7-a49e-9fadc0979fda', - username, - firstName: 'John', - lastName: 'Maverick', - }), - ) - }), + rest.get('https://www.ebi.ac.uk/eva/webservices/rest/v1/meta/species/list', (req, res, ctx) => { + return res( + ctx.json(genotypes_view_test_species_data), + ) + }), + + rest.get('https://www.ebi.ac.uk/eva/webservices/rest/v1/meta/studies/list', (req, res, ctx) => { + return res( + ctx.json(genotypes_view_test_studies_data), + ) + }), + + rest.get('https://www.ebi.ac.uk/eva/webservices/rest/v1/segments/1:3000000-3100000/variants', (req, res, ctx) => { + return res( + ctx.json(genotypes_view_test_variants_data), + ) + }) ] diff --git a/src/test/GenotypeView.test.js b/src/test/GenotypeView.test.js deleted file mode 100644 index 04f26d0..0000000 --- a/src/test/GenotypeView.test.js +++ /dev/null @@ -1,9 +0,0 @@ -import React from 'react' - -import {render} from '@testing-library/react' - -import GenotypeView from "../GenotypeView" - -test('check genotype view component is loading everything correctly', () => { - render({}) -}) \ No newline at end of file diff --git a/src/test/GenotypesView.test.js b/src/test/GenotypesView.test.js new file mode 100644 index 0000000..22a59b8 --- /dev/null +++ b/src/test/GenotypesView.test.js @@ -0,0 +1,21 @@ +import React from 'react' + +import {render, screen} from '@testing-library/react' +import userEvent from '@testing-library/user-event' +import GenotypeView from "../GenotypeView" + +test('check genotype view component is loading everything correctly', () => { + render({}) + + const combo_boxes = screen.getAllByRole('combobox') + expect(combo_boxes[0].name).toBe("species") + expect(combo_boxes[1].name).toBe("assembly") + expect(combo_boxes[2].name).toBe("resultsPerPage") + + expect(screen.getByRole('textbox').value).toBe('1:3000000-3100000') + + expect(screen.getByRole('option', {name: '50'}).selected).toBe(true) + expect(screen.getByRole('option', {name: '10'}).selected).toBe(false) + expect(screen.getByRole('option', {name: '100'}).selected).toBe(false) + +}) \ No newline at end of file diff --git a/src/test/test_data/GenotypesTableData.js b/src/test/test_data/GenotypesTableData.js index 6f43932..8b8c833 100644 --- a/src/test/test_data/GenotypesTableData.js +++ b/src/test/test_data/GenotypesTableData.js @@ -669,97 +669,6 @@ export const genotypes_table_test_data = { "end": 3013263, "reference": "T", "alternate": "C", - "hgvs": { - "genomic": [ - "1:g.3013263T>C" - ] - }, - "sourceEntries": { - "PRJEB9799_ERZ780739": { - "fileId": "ERZ780739", - "studyId": "PRJEB9799", - "format": "GT:AD:DP:GQ:PL", - "cohortStats": { - "ALL": { - "refAllele": "T", - "altAllele": "C", - "variantType": "SNV", - "refAlleleCount": 0, - "altAlleleCount": 0, - "missingAlleles": 0, - "missingGenotypes": 0, - "refAlleleFreq": 0, - "altAlleleFreq": 0, - "maf": 0.16666667, - "mgf": 0, - "mafAllele": "T", - "mgfGenotype": "0/0", - "numSamples": 0, - "transition": true, - "transversion": false - } - }, - "attributes": { - "AC": "10", - "MQRankSum": "2.893", - "FILTER": "PASS", - "set": "variant", - "MQ": "8080", - "AF": "0.833", - "src": "chr1\t3013263\t.\tT\tC\t837.14\tPASS\tAC=10;AF=0.833;AN=12;BaseQRankSum=3.214;ClippingRankSum=-4.466;DP=60;FS=0.000;MLEAC=10;MLEAF=0.833;MQ=55.49;MQ0=0;MQRankSum=2.893;QD=13.95;ReadPosRankSum=-1.199;VQSLOD=1.73;culprit=FS;set=variant", - "MLEAC": "10", - "QUAL": "837.14", - "BaseQRankSum": "3.214", - "MLEAF": "0.833", - "DP": "59", - "ReadPosRankSum": "-1.199", - "AN": "12", - "FS": "0.000", - "MQ0": "0", - "culprit": "FS", - "QD": "13.95", - "VQSLOD": "1.73", - "ClippingRankSum": "-4.466" - }, - "samplesData": { - "CH": { - "GT": "1/1" - }, - "MM": { - "GT": "0/1" - }, - "AMH": { - "GT": "1/1" - }, - "PER": { - "GT": "1/1" - }, - "ARB": { - "GT": "1/1" - }, - "TWH": { - "GT": "0/1" - } - } - } - }, - "annotation": { - "chromosome": "1", - "start": 3013263, - "end": 3013263, - "vepVersion": "89", - "vepCacheVersion": "89", - "consequenceTypes": [ - { - "soTerms": [ - { - "soName": "intergenic_variant", - "soAccession": "SO:0001628" - } - ] - } - ] - }, "length": 1, "type": "SNV", "alleleFreqs": { diff --git a/src/test/test_data/GenotypesViewData.js b/src/test/test_data/GenotypesViewData.js index 8d347b6..8492424 100644 --- a/src/test/test_data/GenotypesViewData.js +++ b/src/test/test_data/GenotypesViewData.js @@ -279,4 +279,2611 @@ export const genotypes_view_test_consequences_data = [ "consequence_ranking": "12", "SO_accession": "SO:0001818" } -] \ No newline at end of file +] + + + +export const genotypes_view_test_species_data = { + "time": 74891, + "apiVersion": "v1", + "queryOptions": { + "metadata": true, + "limit": 50, + "skip": -1, + "count": false + }, + "response": [ + { + "time": 0, + "dbTime": 12, + "numResults": 146, + "numTotalResults": 146, + "resultType": "uk.ac.ebi.eva.lib.models.Assembly", + "result": [ + { + "assemblyAccession": "GCA_000001215.4", + "assemblyChain": "GCA_000001215", + "assemblyVersion": "4", + "assemblyName": "Release 6 plus ISO1 MT", + "assemblyCode": "6", + "taxonomyId": 7227, + "taxonomyCommonName": "Fruit fly", + "taxonomyScientificName": "Drosophila melanogaster", + "taxonomyCode": "dmelanogaster", + "taxonomyEvaName": "fruit fly" + }, + { + "assemblyAccession": "GCA_000001405.1", + "assemblyChain": "GCA_000001405", + "assemblyVersion": "1", + "assemblyName": "GRCh37", + "assemblyCode": "grch37", + "taxonomyId": 9606, + "taxonomyCommonName": "Human", + "taxonomyScientificName": "Homo sapiens", + "taxonomyCode": "hsapiens", + "taxonomyEvaName": "human" + }, + { + "assemblyAccession": "GCA_000001405.14", + "assemblyChain": "GCA_000001405", + "assemblyVersion": "14", + "assemblyName": "GRCh37.p13", + "assemblyCode": "grch37", + "taxonomyId": 9606, + "taxonomyCommonName": "Human", + "taxonomyScientificName": "Homo sapiens", + "taxonomyCode": "hsapiens", + "taxonomyEvaName": "human" + }, + { + "assemblyAccession": "GCA_000001405.15", + "assemblyChain": "GCA_000001405", + "assemblyVersion": "15", + "assemblyName": "GRCh38", + "assemblyCode": "grch38", + "taxonomyId": 9606, + "taxonomyCommonName": "Human", + "taxonomyScientificName": "Homo sapiens", + "taxonomyCode": "hsapiens", + "taxonomyEvaName": "human" + }, + { + "assemblyAccession": "GCA_000001405.18", + "assemblyChain": "GCA_000001405", + "assemblyVersion": "18", + "assemblyName": "GRCh38.p3", + "assemblyCode": "grch38", + "taxonomyId": 9606, + "taxonomyCommonName": "Human", + "taxonomyScientificName": "Homo sapiens", + "taxonomyCode": "hsapiens", + "taxonomyEvaName": "human" + }, + { + "assemblyAccession": "GCA_000001405.20", + "assemblyChain": "GCA_000001405", + "assemblyVersion": "20", + "assemblyName": "GRCh38.p5", + "assemblyCode": "grch38", + "taxonomyId": 9606, + "taxonomyCommonName": "Human", + "taxonomyScientificName": "Homo sapiens", + "taxonomyCode": "hsapiens", + "taxonomyEvaName": "human" + }, + { + "assemblyAccession": "GCA_000001405.25", + "assemblyChain": "GCA_000001405", + "assemblyVersion": "25", + "assemblyName": "GRCh38.p10", + "assemblyCode": "grch38p10", + "taxonomyId": 9606, + "taxonomyCommonName": "Human", + "taxonomyScientificName": "Homo sapiens", + "taxonomyCode": "hsapiens", + "taxonomyEvaName": "human" + }, + { + "assemblyAccession": "GCA_000001405.27", + "assemblyChain": "GCA_000001405", + "assemblyVersion": "27", + "assemblyName": "GRCh38.p12", + "assemblyCode": "grch38", + "taxonomyId": 9606, + "taxonomyCommonName": "Human", + "taxonomyScientificName": "Homo sapiens", + "taxonomyCode": "hsapiens", + "taxonomyEvaName": "human" + }, + { + "assemblyAccession": "GCA_000001405.28", + "assemblyChain": "GCA_000001405", + "assemblyVersion": "28", + "assemblyName": "GRCh38.p13", + "assemblyCode": "grch38", + "taxonomyId": 9606, + "taxonomyCommonName": "Human", + "taxonomyScientificName": "Homo sapiens", + "taxonomyCode": "hsapiens", + "taxonomyEvaName": "human" + }, + { + "assemblyAccession": "GCA_000001635.1", + "assemblyChain": "GCA_000001635", + "assemblyVersion": "1", + "assemblyName": "MGSCv37", + "assemblyCode": "mgscv37", + "taxonomyId": 10090, + "taxonomyCommonName": "House mouse", + "taxonomyScientificName": "Mus musculus", + "taxonomyCode": "mmusculus", + "taxonomyEvaName": "mouse" + }, + { + "assemblyAccession": "GCA_000001635.2", + "assemblyChain": "GCA_000001635", + "assemblyVersion": "2", + "assemblyName": "GRCm38", + "assemblyCode": "grcm38", + "taxonomyId": 10090, + "taxonomyCommonName": "House mouse", + "taxonomyScientificName": "Mus musculus", + "taxonomyCode": "mmusculus", + "taxonomyEvaName": "mouse" + }, + { + "assemblyAccession": "GCA_000001635.5", + "assemblyChain": "GCA_000001635", + "assemblyVersion": "5", + "assemblyName": "GRCm38.p3", + "assemblyCode": "grcm38", + "taxonomyId": 10090, + "taxonomyCommonName": "House mouse", + "taxonomyScientificName": "Mus musculus", + "taxonomyCode": "mmusculus", + "taxonomyEvaName": "mouse" + }, + { + "assemblyAccession": "GCA_000001635.6", + "assemblyChain": "GCA_000001635", + "assemblyVersion": "6", + "assemblyName": "GRCm38.p4", + "assemblyCode": "grcm38", + "taxonomyId": 10090, + "taxonomyCommonName": "House mouse", + "taxonomyScientificName": "Mus musculus", + "taxonomyCode": "mmusculus", + "taxonomyEvaName": "mouse" + }, + { + "assemblyAccession": "GCA_000001635.7", + "assemblyChain": "GCA_000001635", + "assemblyVersion": "7", + "assemblyName": "GRCm38.p5", + "assemblyCode": "grcm38", + "taxonomyId": 10090, + "taxonomyCommonName": "House mouse", + "taxonomyScientificName": "Mus musculus", + "taxonomyCode": "mmusculus", + "taxonomyEvaName": "mouse" + }, + { + "assemblyAccession": "GCA_000001635.9", + "assemblyChain": "GCA_000001635", + "assemblyVersion": "9", + "assemblyName": "GRCm39", + "assemblyCode": "grcm39", + "taxonomyId": 10090, + "taxonomyCommonName": "House mouse", + "taxonomyScientificName": "Mus musculus", + "taxonomyCode": "mmusculus", + "taxonomyEvaName": "mouse" + }, + { + "assemblyAccession": "GCA_000001735.1", + "assemblyChain": "GCA_000001735", + "assemblyVersion": "1", + "assemblyName": "TAIR10", + "assemblyCode": "tair10", + "taxonomyId": 3702, + "taxonomyCommonName": "thale cress", + "taxonomyScientificName": "Arabidopsis thaliana", + "taxonomyCode": "athaliana", + "taxonomyEvaName": "thale cress" + }, + { + "assemblyAccession": "GCA_000001895.4", + "assemblyChain": "GCA_000001895", + "assemblyVersion": "4", + "assemblyName": "Rnor_6.0", + "assemblyCode": "60", + "taxonomyId": 10116, + "taxonomyCommonName": "rat", + "taxonomyScientificName": "Rattus norvegicus", + "taxonomyCode": "rnorvegicus", + "taxonomyEvaName": " rat" + }, + { + "assemblyAccession": "GCA_000002035.3", + "assemblyChain": "GCA_000002035", + "assemblyVersion": "3", + "assemblyName": "GRCz10", + "assemblyCode": "grcz10", + "taxonomyId": 7955, + "taxonomyCommonName": "Zebrafish", + "taxonomyScientificName": "Danio rerio", + "taxonomyCode": "drerio", + "taxonomyEvaName": "zebrafish" + }, + { + "assemblyAccession": "GCA_000002035.4", + "assemblyChain": "GCA_000002035", + "assemblyVersion": "4", + "assemblyName": "GRCz11", + "assemblyCode": "grcz11", + "taxonomyId": 7955, + "taxonomyCommonName": "Zebrafish", + "taxonomyScientificName": "Danio rerio", + "taxonomyCode": "drerio", + "taxonomyEvaName": "zebrafish" + }, + { + "assemblyAccession": "GCA_000002285.2", + "assemblyChain": "GCA_000002285", + "assemblyVersion": "2", + "assemblyName": "CanFam3.1", + "assemblyCode": "31", + "taxonomyId": 9615, + "taxonomyCommonName": "Dog", + "taxonomyScientificName": "Canis lupus familiaris", + "taxonomyCode": "cfamiliaris", + "taxonomyEvaName": "dog" + }, + { + "assemblyAccession": "GCA_000002285.4", + "assemblyChain": "GCA_000002285", + "assemblyVersion": "4", + "assemblyName": "Dog10K_Boxer_Tasha", + "assemblyCode": "dog10kboxertasha", + "taxonomyId": 9615, + "taxonomyCommonName": "Dog", + "taxonomyScientificName": "Canis lupus familiaris", + "taxonomyCode": "cfamiliaris", + "taxonomyEvaName": "dog" + }, + { + "assemblyAccession": "GCA_000002305.1", + "assemblyChain": "GCA_000002305", + "assemblyVersion": "1", + "assemblyName": "EquCab2.0", + "assemblyCode": "20", + "taxonomyId": 9796, + "taxonomyCommonName": "Horse", + "taxonomyScientificName": "Equus caballus", + "taxonomyCode": "ecaballus", + "taxonomyEvaName": "horse" + }, + { + "assemblyAccession": "GCA_000002315.3", + "assemblyChain": "GCA_000002315", + "assemblyVersion": "3", + "assemblyName": "Gallus_gallus-5.0", + "assemblyCode": "galgal5", + "taxonomyId": 9031, + "taxonomyCommonName": "Chicken", + "taxonomyScientificName": "Gallus gallus", + "taxonomyCode": "ggallus", + "taxonomyEvaName": "chicken" + }, + { + "assemblyAccession": "GCA_000002315.5", + "assemblyChain": "GCA_000002315", + "assemblyVersion": "5", + "assemblyName": "GRCg6a", + "assemblyCode": "grcg6a", + "taxonomyId": 9031, + "taxonomyCommonName": "Chicken", + "taxonomyScientificName": "Gallus gallus", + "taxonomyCode": "ggallus", + "taxonomyEvaName": "chicken" + }, + { + "assemblyAccession": "GCA_000002335.3", + "assemblyChain": "GCA_000002335", + "assemblyVersion": "3", + "assemblyName": "Tcas5.2", + "assemblyCode": "tcas52", + "taxonomyId": 7070, + "taxonomyCommonName": "red flour beetle", + "taxonomyScientificName": "Tribolium castaneum", + "taxonomyCode": "tcastaneum", + "taxonomyEvaName": "red flour beetle" + }, + { + "assemblyAccession": "GCA_000002655.1", + "assemblyChain": "GCA_000002655", + "assemblyVersion": "1", + "assemblyName": "ASM265v1", + "assemblyCode": "asm265v1", + "taxonomyId": 330879, + "taxonomyCommonName": "Ascomycetes", + "taxonomyScientificName": "Aspergillus fumigatus Af293", + "taxonomyCode": "afumigatus", + "taxonomyEvaName": "Ascomycetes" + }, + { + "assemblyAccession": "GCA_000002765.3", + "assemblyChain": "GCA_000002765", + "assemblyVersion": "3", + "assemblyName": "GCA_000002765", + "assemblyCode": "GCA000002765", + "taxonomyId": 5833, + "taxonomyCommonName": "Plasmodium falciparum", + "taxonomyScientificName": "Plasmodium falciparum", + "taxonomyCode": "pfalciparum", + "taxonomyEvaName": "Plasmodium falciparum" + }, + { + "assemblyAccession": "GCA_000003025.4", + "assemblyChain": "GCA_000003025", + "assemblyVersion": "4", + "assemblyName": "Sscrofa10.2", + "assemblyCode": "102", + "taxonomyId": 9823, + "taxonomyCommonName": "Pig", + "taxonomyScientificName": "Sus scrofa", + "taxonomyCode": "sscrofa", + "taxonomyEvaName": "pig" + }, + { + "assemblyAccession": "GCA_000003025.6", + "assemblyChain": "GCA_000003025", + "assemblyVersion": "6", + "assemblyName": "Sscrofa11.1", + "assemblyCode": "111", + "taxonomyId": 9823, + "taxonomyCommonName": "Pig", + "taxonomyScientificName": "Sus scrofa", + "taxonomyCode": "sscrofa", + "taxonomyEvaName": "pig" + }, + { + "assemblyAccession": "GCA_000003055.3", + "assemblyChain": "GCA_000003055", + "assemblyVersion": "3", + "assemblyName": "Bos_taurus_UMD_3.1", + "assemblyCode": "umd31", + "taxonomyId": 9913, + "taxonomyCommonName": "Cattle", + "taxonomyScientificName": "Bos taurus", + "taxonomyCode": "btaurus", + "taxonomyEvaName": "cow" + }, + { + "assemblyAccession": "GCA_000003055.3", + "assemblyChain": "GCA_000003055", + "assemblyVersion": "3", + "assemblyName": "Bos_taurus_UMD_3.1", + "assemblyCode": "umd31", + "taxonomyId": 9915, + "taxonomyCommonName": "Zebu cattle", + "taxonomyScientificName": "Bos indicus", + "taxonomyCode": "bindicus", + "taxonomyEvaName": "Zebu" + }, + { + "assemblyAccession": "GCA_000003055.3", + "assemblyChain": "GCA_000003055", + "assemblyVersion": "3", + "assemblyName": "Bos_taurus_UMD_3.1", + "assemblyCode": "umd31", + "taxonomyId": 43346, + "taxonomyCommonName": "Bison", + "taxonomyScientificName": "Bison bison", + "taxonomyCode": "bbison", + "taxonomyEvaName": "Bison" + }, + { + "assemblyAccession": "GCA_000003055.5", + "assemblyChain": "GCA_000003055", + "assemblyVersion": "5", + "assemblyName": "Bos_taurus_UMD_3.1.1", + "assemblyCode": "umd311", + "taxonomyId": 9913, + "taxonomyCommonName": "Cattle", + "taxonomyScientificName": "Bos taurus", + "taxonomyCode": "btaurus", + "taxonomyEvaName": "cow" + }, + { + "assemblyAccession": "GCA_000003055.5", + "assemblyChain": "GCA_000003055", + "assemblyVersion": "5", + "assemblyName": "Bos_taurus_UMD_3.1.1", + "assemblyCode": "umd311", + "taxonomyId": 30521, + "taxonomyCommonName": "domestic yak", + "taxonomyScientificName": "Bos grunniens", + "taxonomyCode": "bgrunniens", + "taxonomyEvaName": "domestic yak" + }, + { + "assemblyAccession": "GCA_000003055.5", + "assemblyChain": "GCA_000003055", + "assemblyVersion": "5", + "assemblyName": "Bos_taurus_UMD_3.1.1", + "assemblyCode": "umd311", + "taxonomyId": 9902, + "taxonomyCommonName": "European bison", + "taxonomyScientificName": "Bison bonasus", + 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"assemblyName": "NNQGG.v01", + "assemblyCode": "nnqggv1", + "taxonomyId": 452646, + "taxonomyCommonName": "American mink", + "taxonomyScientificName": "Neovison vison", + "taxonomyCode": "nvison", + "taxonomyEvaName": "mink" + }, + { + "assemblyAccession": "GCA_900382725.1", + "assemblyChain": "GCA_900382725", + "assemblyVersion": "1", + "assemblyName": "Pyn.v1", + "assemblyCode": "pynv1", + "taxonomyId": 2094558, + "taxonomyCommonName": "King cherry flower", + "taxonomyScientificName": "Prunus yedoensis var. nudiflora", + "taxonomyCode": "pyedoensis", + "taxonomyEvaName": "king cherry flower" + }, + { + "assemblyAccession": "GCA_900491625.1", + "assemblyChain": "GCA_900491625", + "assemblyVersion": "1", + "assemblyName": "A5_41150_contigs.fasta.gz", + "assemblyCode": "a541150contigsfastagz", + "taxonomyId": 3329, + "taxonomyCommonName": "Norway spruce", + "taxonomyScientificName": "Picea abies", + "taxonomyCode": "pabies", + "taxonomyEvaName": "norway spruce" + }, + { + "assemblyAccession": "GCA_900519105.1", + "assemblyChain": "GCA_900519105", + "assemblyVersion": "1", + "assemblyName": "iwgsc_refseqv1.0", + "assemblyCode": "iwgscrefseqv10", + "taxonomyId": 4565, + "taxonomyCommonName": "Bread wheat", + "taxonomyScientificName": "Triticum aestivum", + "taxonomyCode": "taestivum", + "taxonomyEvaName": "wheat" + }, + { + "assemblyAccession": "GCA_901482405.1", + "assemblyChain": "GCA_901482405", + "assemblyVersion": "1", + "assemblyName": "Assembly for barley cultivar Morex v1.0", + "assemblyCode": "assemblyforbarleycultivarmorexv10", + "taxonomyId": 112509, + "taxonomyCommonName": "Domesticated barley", + "taxonomyScientificName": "Hordeum vulgare subsp. vulgare", + "taxonomyCode": "hvulgare", + "taxonomyEvaName": "barley" + }, + { + "assemblyAccession": "GCA_902375235.1", + "assemblyChain": "GCA_902375235", + "assemblyVersion": "1", + "assemblyName": "Morex_v1.0_update_x", + "assemblyCode": "morexv10updatex", + "taxonomyId": 4513, + "taxonomyCommonName": "Barley", + "taxonomyScientificName": "Hordeum vulgare", + "taxonomyCode": "hvulgare", + "taxonomyEvaName": "Barley" + }, + { + "assemblyAccession": "GCA_902498975.1", + "assemblyChain": "GCA_902498975", + "assemblyVersion": "1", + "assemblyName": "Morex_v2.0", + "assemblyCode": "morexv20", + "taxonomyId": 112509, + "taxonomyCommonName": "Domesticated barley", + "taxonomyScientificName": "Hordeum vulgare subsp. vulgare", + "taxonomyCode": "hvulgare", + "taxonomyEvaName": "barley" + }, + { + "assemblyAccession": "GCA_902687465.1", + "assemblyChain": "GCA_902687465", + "assemblyVersion": "1", + "assemblyName": "Rye_Lo7_2018_v1p1p1", + "assemblyCode": "ryelo72018v1p1p1", + "taxonomyId": 4550, + "taxonomyCommonName": "rye", + "taxonomyScientificName": "Secale cereale", + "taxonomyCode": "scereale", + "taxonomyEvaName": "rye" + }, + { + "assemblyAccession": "GCA_902859565.1", + "assemblyChain": "GCA_902859565", + "assemblyVersion": "1", + "assemblyName": "Fonio_CM05836", + "assemblyCode": "foniocm05836", + "taxonomyId": 1010633, + "taxonomyCommonName": "White fonio", + "taxonomyScientificName": "Digitaria exilis", + "taxonomyCode": "dexilis", + "taxonomyEvaName": "White fonio" + }, + { + "assemblyAccession": "GCA_904849725.1", + "assemblyChain": "GCA_904849725", + "assemblyVersion": "1", + "assemblyName": "MorexV3_pseudomolecules_assembly", + "assemblyCode": "morexv3pseudomoleculesassembly", + "taxonomyId": 4513, + "taxonomyCommonName": "Barley", + "taxonomyScientificName": "Hordeum vulgare", + "taxonomyCode": "hvulgare", + "taxonomyEvaName": "Barley" + }, + { + "assemblyAccession": "GCA_904849725.1", + "assemblyChain": "GCA_904849725", + "assemblyVersion": "1", + "assemblyName": "MorexV3_pseudomolecules_assembly", + "assemblyCode": "morexv3pseudomoleculesassembly", + "taxonomyId": 112509, + "taxonomyCommonName": "Domesticated barley", + "taxonomyScientificName": "Hordeum vulgare subsp. vulgare", + "taxonomyCode": "hvulgare", + "taxonomyEvaName": "barley" + }, + { + "assemblyAccession": "GCA_905237065.2", + "assemblyChain": "GCA_905237065", + "assemblyVersion": "2", + "assemblyName": "Ssal_v3.1", + "assemblyCode": "ssalv31", + "taxonomyId": 8030, + "taxonomyCommonName": "Salmon", + "taxonomyScientificName": "Salmo salar", + "taxonomyCode": "ssalar", + "taxonomyEvaName": "salmon" + }, + { + "assemblyAccession": "GCF_000002275.2", + "assemblyChain": "GCF_000002275", + "assemblyVersion": "2", + "assemblyName": "Ornithorhynchus_anatinus-5.0.1", + "assemblyCode": "501", + "taxonomyId": 9258, + "taxonomyCommonName": "platypus", + "taxonomyScientificName": "Ornithorhynchus anatinus", + "taxonomyCode": "oanatinus", + "taxonomyEvaName": "platypus" + }, + { + "assemblyAccession": "GCF_000188115.1", + "assemblyChain": "GCF_000188115", + "assemblyVersion": "1", + "assemblyName": "SL2.40", + "assemblyCode": "sl240", + "taxonomyId": 4081, + "taxonomyCommonName": "Tomato", + "taxonomyScientificName": "Solanum lycopersicum", + "taxonomyCode": "slycopersicum", + "taxonomyEvaName": "tomato" + } + ] + } + ] +} + + + +export const genotypes_view_test_studies_data = { + "time": 291425, + "apiVersion": "v1", + "queryOptions": { + "metadata": true, + "limit": 50, + "skip": -1, + "count": false + }, + "response": [ + { + "time": 0, + "dbTime": 291425, + "numResults": 13, + "numTotalResults": 13, + "result": [ + { + "studyId": "PRJEB30116", + "studyName": "Exome sequencing and association between identified variants and racing performance in Quarter Horses", + "filesCount": 1 + }, + { + "studyId": "PRJEB23441", + "studyName": "Novel KIT variants underlying dominant white in the Australian horse population", + "filesCount": 1 + }, + { + "studyId": "PRJEB22866", + "studyName": "Public Science and Technology Research Funds Projects of Agriculture", + "filesCount": 1 + }, + { + "studyId": "PRJEB32686", + "studyName": "Japanese Thoroughbred horse project 2019", + "filesCount": 1 + }, + { + "studyId": "PRJEB26741", + "studyName": "Genetic risk for ocular squamous cell carcinoma in Haflinger horses", + "filesCount": 1 + }, + { + "studyId": "PRJEB24624", + "studyName": "A genome-wide association analysis for show-jumping performance in Hanoverian stallions", + "filesCount": 1 + }, + { + "studyId": "PRJEB38010", + "studyName": "Selection in Finnhorse", + "filesCount": 1 + }, + { + "studyId": "PRJEB9799", + "studyName": "Whole genome detection of sequences of six horses from diverse breeds", + "filesCount": 1 + }, + { + "studyId": "BROAD_EQUCAB2.0:2008.08.08", + "studyName": "BROAD_GENOME - BROAD_EQUCAB2.0:2008.08.08", + "filesCount": 1 + }, + { + "studyId": "PRJEB23301", + "studyName": "eQTL Discovery and their Association with Severe Equine Asthma in European Warmblood Horses", + "filesCount": 1 + }, + { + "studyId": "PRJEB25439", + "studyName": "Multiple Alleles of ACAN Associated with Chondrodysplastic Dwarfism in Miniature Horses", + "filesCount": 1 + }, + { + "studyId": "PRJEB24630", + "studyName": "Body size in horses", + "filesCount": 1 + }, + { + "studyId": "PRJEB27771", + "studyName": "Horse pearl coat genetic variant", + "filesCount": 1 + } + ] + } + ] +} + + + +export const genotypes_view_test_variants_data = { + "time": 194, + "apiVersion": "v1", + "queryOptions": { + "metadata": true, + "limit": 50, + "skip": -1, + "count": false + }, + "response": [ + { + "time": 0, + "dbTime": 194, + "numResults": 50, + "numTotalResults": 473, + "result": [ + { + "chromosome": "1", + "start": 3000829, + "end": 3000829, + "reference": "C", + "alternate": "T", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB9799": 0.083333336 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3001637, + "end": 3001637, + "reference": "C", + "alternate": "T", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB23301": 0.09630607, + "PRJEB9799": 0.5 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3001683, + "end": 3001683, + "reference": "A", + "alternate": "C", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB23301": 0.49604222, + "PRJEB9799": 0.25 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3002480, + "end": 3002480, + "reference": "T", + "alternate": "C", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB9799": 0.25 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3002750, + "end": 3002750, + "reference": "G", + "alternate": "A", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB23301": 0.079155676 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3002807, + "end": 3002807, + "reference": "A", + "alternate": "G", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB9799": 0.083333336 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3003058, + "end": 3003058, + "reference": "A", + "alternate": "C", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB9799": 0 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3003059, + "end": 3003059, + "reference": "A", + "alternate": "T", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB9799": 0 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3003105, + "end": 3003105, + "reference": "G", + "alternate": "A", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB9799": 0.083333336 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3004246, + "end": 3004246, + "reference": "G", + "alternate": "A", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB9799": 0.41666666 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3004381, + "end": 3004381, + "reference": "T", + "alternate": "A", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB9799": 0.41666666 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3004453, + "end": 3004453, + "reference": "C", + "alternate": "T", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB9799": 0.41666666 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3004546, + "end": 3004546, + "reference": "T", + "alternate": "C", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB9799": 0.25 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3004613, + "end": 3004613, + "reference": "C", + "alternate": "A", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB9799": 0.083333336 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3004930, + "end": 3004930, + "reference": "G", + "alternate": "", + "length": 1, + "type": "DEL", + "alleleFreqs": { + "PRJEB9799": 0.16666667 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3005121, + "end": 3005121, + "reference": "C", + "alternate": "G", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB9799": 0.083333336 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3005228, + "end": 3005228, + "reference": "A", + "alternate": "G", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB9799": 0.33333334 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3005538, + "end": 3005538, + "reference": "G", + "alternate": "A", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB23301": 0.072559364 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3005949, + "end": 3005949, + "reference": "C", + "alternate": "", + "length": 1, + "type": "DEL", + "alleleFreqs": { + "PRJEB9799": 0 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3006066, + "end": 3006066, + "reference": "G", + "alternate": "A", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB23301": 0.013192612 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3006316, + "end": 3006322, + "reference": "", + "alternate": "GCAACCC", + "length": 7, + "type": "INS", + "alleleFreqs": { + "PRJEB9799": 0.5 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3006319, + "end": 3006321, + "reference": "", + "alternate": "CTG", + "length": 3, + "type": "INS", + "alleleFreqs": { + "PRJEB9799": 0.5 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3006659, + "end": 3006659, + "reference": "C", + "alternate": "T", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB23301": 0.027704485 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3006845, + "end": 3006845, + "reference": "G", + "alternate": "A", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB9799": 0.083333336 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3006897, + "end": 3006897, + "reference": "G", + "alternate": "A", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB23301": 0.006596306 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3007440, + "end": 3007440, + "reference": "C", + "alternate": "T", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB9799": 0.16666667 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3007473, + "end": 3007473, + "reference": "A", + "alternate": "G", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB9799": 0.41666666 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3007587, + "end": 3007587, + "reference": "C", + "alternate": "T", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB9799": 0.16666667 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3007644, + "end": 3007644, + "reference": "T", + "alternate": "C", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB9799": 0.16666667 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3007955, + "end": 3007955, + "reference": "G", + "alternate": "A", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB9799": 0.16666667 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3008125, + "end": 3008125, + "reference": "G", + "alternate": "T", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB9799": 0.16666667 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3008755, + "end": 3008755, + "reference": "T", + "alternate": "C", + "mainId": "rs68485566", + "ids": [ + "ss105144628", + "rs68485566" + ], + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB9799": 0.16666667 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3008759, + "end": 3008759, + "reference": "G", + "alternate": "T", + "mainId": "rs68485567", + "ids": [ + "rs68485567", + "ss105144629" + ], + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB9799": 0.41666666 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3010141, + "end": 3010141, + "reference": "A", + "alternate": "G", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB9799": 0.25 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3010317, + "end": 3010317, + "reference": "G", + "alternate": "", + "length": 1, + "type": "DEL", + "alleleFreqs": { + "PRJEB9799": 0.083333336 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3011552, + "end": 3011552, + "reference": "G", + "alternate": "A", + "mainId": "rs68485568", + "ids": [ + "ss105144630", + "rs68485568" + ], + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB9799": 0.16666667 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3011897, + "end": 3011897, + "reference": "A", + "alternate": "G", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB23301": 0.13324538 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3012333, + "end": 3012333, + "reference": "G", + "alternate": "T", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB9799": 0.083333336 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3012497, + "end": 3012497, + "reference": "G", + "alternate": "A", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB9799": 0.33333334 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3012533, + "end": 3012533, + "reference": "C", + "alternate": "G", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB9799": 0.083333336 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3012542, + "end": 3012542, + "reference": "C", + "alternate": "T", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB9799": 0.33333334 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3012602, + "end": 3012602, + "reference": "C", + "alternate": "A", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB23301": 0.39709762, + "PRJEB9799": 0.25 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3012845, + "end": 3012845, + "reference": "A", + "alternate": "C", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB9799": 0.25 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3012924, + "end": 3012924, + "reference": "C", + "alternate": "T", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB9799": 0.33333334 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3013130, + "end": 3013130, + "reference": "A", + "alternate": "G", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB23301": 0.035620052 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3013263, + "end": 3013263, + "reference": "T", + "alternate": "C", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB9799": 0.16666667 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3013351, + "end": 3013351, + "reference": "A", + "alternate": "G", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB23301": 0.42348284, + "PRJEB9799": 0.16666667 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3013423, + "end": 3013423, + "reference": "G", + "alternate": "A", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB23301": 0.09894459, + "PRJEB9799": 0.41666666 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3013475, + "end": 3013475, + "reference": "T", + "alternate": "C", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB23301": 0.07387863 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + }, + { + "chromosome": "1", + "start": 3014040, + "end": 3014040, + "reference": "C", + "alternate": "A", + "length": 1, + "type": "SNV", + "alleleFreqs": { + "PRJEB9799": 0.33333334 + }, + "color": "#636363", + "consequenceName": "intergenic_variant" + } + ] + } + ] +} \ No newline at end of file