diff --git a/eva_assembly_ingestion/nextflow/remap_cluster.nf b/eva_assembly_ingestion/nextflow/remap_cluster.nf index d4ca916..ce0ac3e 100644 --- a/eva_assembly_ingestion/nextflow/remap_cluster.nf +++ b/eva_assembly_ingestion/nextflow/remap_cluster.nf @@ -354,8 +354,8 @@ workflow { backpropagate_clusters(qc_clustering.out.clustering_qc_log_filename.collect()) }else{ // We're using params.genome_assembly_dir because cluster_unclustered_variants needs to receive a file object - cluster_unclustered_variants(params.genome_assembly_dir) - qc_clustering(cluster_unclustered_variants.out.rs_report_filename) + cluster_unclustered_variants(params.genome_assembly_dir, source_to_target) + qc_clustering(cluster_unclustered_variants.out.rs_report_filename, source_to_target) } }