Skip to content

Issues: EBIvariation/CMAT

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

57 Open 162 Closed
57 Open 162 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Support new somatic and oncogenic clinical classifications
#447 opened Oct 18, 2024 by apriltuesday
1
Update ClinVar dataset breakdown code for V2 and update sankey diagrams
#433 opened May 24, 2024 by apriltuesday
Include ClinVar xrefs in manual curation spreadsheet manual curation
#429 opened May 14, 2024 by apriltuesday
Investigate multiple mappings in trait mapping database Ontology mapping
#428 opened May 1, 2024 by apriltuesday
Investigate decrease in used trait mappings from 2024.03 to 2024.06 submissions Ontology mapping
#427 opened May 1, 2024 by apriltuesday
Speed up evidence string validation
#422 opened Mar 4, 2024 by apriltuesday
Exclude unsupported EFO branches from Open Targets term mapping
#417 opened Feb 2, 2024 by apriltuesday
1
Better processing of exact MONDO/HP mappings not in EFO manual curation
#414 opened Jan 22, 2024 by apriltuesday
Process to handle meaningful but non-mappable trait terms manual curation
#413 opened Jan 19, 2024 by apriltuesday
Adapt Conda wrapper script for installing from source
#409 opened Jan 9, 2024 by apriltuesday
Develop and document curation process to import from MONDO/HP
#388 opened Jun 29, 2023 by tcezard
Documentation for evidence string schema and how fields are generated Documentation
#387 opened Jun 27, 2023 by apriltuesday
1
Investigate use of all trait names vs. preferred trait names in OT evidence generation Ontology mapping
#384 opened Jun 12, 2023 by apriltuesday
1
Revisit Zooma feedback, how it is generated and used
#373 opened Apr 11, 2023 by apriltuesday
Current HGVS extraction should also take into account integerValue attribute Bug
#372 opened Apr 4, 2023 by apriltuesday
Look into traits with no valid names Data
#370 opened Mar 24, 2023 by apriltuesday
2
Improve functional consequence reporting for structural variants complex events Roadmap item 2 (original issue #205) functional consequences
#366 opened Feb 24, 2023 by apriltuesday
Explore pushing mappings file into Github manual curation
#364 opened Jan 31, 2023 by apriltuesday
Exploiting VCV IDs for variant representation and aggregation in OpenTargets complex events Roadmap item 2 (original issue #205) Documentation
#361 opened Jan 31, 2023 by M-casado
Direction of effect for variant consequences functional consequences
#356 opened Jan 6, 2023 by apriltuesday
Improve pipeline counts and visualisations Documentation
#355 opened Jan 6, 2023 by apriltuesday
1
Investigate traits associated with imprecise complex variants complex events Roadmap item 2 (original issue #205)
#354 opened Jan 6, 2023 by apriltuesday
Investigate PanelApp as a source of complex variation data sources Roadmap item 3 (original issue #206)
#352 opened Nov 25, 2022 by apriltuesday
1
Revisit acceptable biotypes for consequences functional consequences
#328 opened May 13, 2022 by apriltuesday
Investigate using MANE transcripts for consequence prediction functional consequences
#317 opened Mar 30, 2022 by apriltuesday
ProTip! Exclude everything labeled bug with -label:bug.