You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
We saw queries like /spot/zooma/v2/api/services/annotate?propertyValue=animal+ovary&propertyType=organism+part&filter=required:[atlas,gwas],preferred:[atlas,gwas],ontologies:[uberon,efo%0D%0A]. The additional characters in the ontologies parameter are causing Zooma to become unresponsive.
The error in the logs was 2019-07-22 09:50:15,277 ERROR [http-bio-8080-exec-16] access.Zooma (Zooma.java:674) - Unexpected exception [QueryParseException: Lexical error at line 53, column 34. Encountered: "\r" (13), after : "\"efo"] which then triggered a bunch of search timeout exceptions
2019-07-22 10:09:40,981 ERROR [ui-search-thread-26] web.ZoomaMappingController$2 (ZoomaMappingController.java:373) - Problems annotating 'Property 'Microtubule clumps'' (SearchTimeoutException: Search for 'Microtubule clumps' took too long)
2019-07-22 10:09:40,986 ERROR [search-completion-monitor-280979] web.ZoomaMappingController$3 (ZoomaMappingController.java:436) - A job failed to execute - there are 1 fails now. Error was:
uk.ac.ebi.fgpt.zooma.exception.SearchTimeoutException: Search for 'CD4-positive' took too long
at uk.ac.ebi.fgpt.zooma.access.Zooma.waitForResults(Zooma.java:381)
at uk.ac.ebi.fgpt.zooma.access.Zooma.annotate(Zooma.java:294)
at uk.ac.ebi.fgpt.zooma.web.ZoomaMappingController$2.call(ZoomaMappingController.java:362)
at uk.ac.ebi.fgpt.zooma.web.ZoomaMappingController$2.call(ZoomaMappingController.java:342)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.util.concurrent.TimeoutException
at java.util.concurrent.FutureTask.get(FutureTask.java:205)
at uk.ac.ebi.fgpt.zooma.access.Zooma.waitForResults(Zooma.java:353)
... 9 more
Zooma wasn't able to recover or accept any new queries after this.
The text was updated successfully, but these errors were encountered:
We saw queries like
/spot/zooma/v2/api/services/annotate?propertyValue=animal+ovary&propertyType=organism+part&filter=required:[atlas,gwas],preferred:[atlas,gwas],ontologies:[uberon,efo%0D%0A]
. The additional characters in theontologies
parameter are causing Zooma to become unresponsive.The error in the logs was
2019-07-22 09:50:15,277 ERROR [http-bio-8080-exec-16] access.Zooma (Zooma.java:674) - Unexpected exception [QueryParseException: Lexical error at line 53, column 34. Encountered: "\r" (13), after : "\"efo"]
which then triggered a bunch of search timeout exceptionsZooma wasn't able to recover or accept any new queries after this.
The text was updated successfully, but these errors were encountered: