online_schedule.md

Schedule for Single-cell RNA-seq workshop

Pre-reading

• Introduction to scRNA-seq
• Raw data to count matrix
• Download this project!!
• Install these libraries

Day 1

Time	Topic	Instructor
20m	Workshop introduction	Radhika
skip?	R refresher Q & A	Mary
30m	scRNA-seq pre-reading discussion	Meeta/Mary
40m	Quality control set-up	Jihe
1h	Single-cell RNA-seq design and methods	Dr. Sarah Boswell

Self Learning #1

• Quality control
• Theory of Normalization and PCA
• (after split) Normalization

Day 2

Time	Topic	Instructor
1h	Self-learning lessons discussion	Meeta/Mary
1h	(after split) Integration	Mary

Self Learning #2

• Clustering
• Clustering quality control
• Marker identification

Day 3

Time	Topic	Instructor
1h	Self-learning lessons discussion	Meeta/Mary
1h	Discussion, Final Q & A	All
30m	Wrap up	Radhika