From 4080b65dbffab9f99f232c68d20e29af8038397b Mon Sep 17 00:00:00 2001 From: "J. Allen Baron" Date: Wed, 16 Aug 2023 14:23:00 -0400 Subject: [PATCH] Update NCBITaxon term IDs (none new) IDs changed by NCBI Taxonomy in response to ICTV name changes. --- src/ontology/imports/ncbitaxon_terms.txt | 32 ++++++++++++------------ 1 file changed, 16 insertions(+), 16 deletions(-) diff --git a/src/ontology/imports/ncbitaxon_terms.txt b/src/ontology/imports/ncbitaxon_terms.txt index 61ad7dbfa..fee4a0486 100644 --- a/src/ontology/imports/ncbitaxon_terms.txt +++ b/src/ontology/imports/ncbitaxon_terms.txt @@ -36,15 +36,15 @@ NCBITaxon:11089 # Yellow fever virus NCBITaxon:11103 # Hepatitis C virus NCBITaxon:11234 # Measles virus NCBITaxon:11250 # Human respiratory syncytial virus -NCBITaxon:11269 # Marburg marburgvirus +NCBITaxon:3052505 # Orthomarburgvirus marburgense (Marburg marburgvirus) NCBITaxon:11292 # Rabies virus NCBITaxon:11320 # Influenza A virus NCBITaxon:11552 # Influenza C virus NCBITaxon:11577 # La Crosse virus NCBITaxon:11588 # Rift Valley fever virus -NCBITaxon:11620 # Lassa virus -NCBITaxon:11623 # Lymphocytic choriomeningitis virus -NCBITaxon:11628 # Machupo virus +NCBITaxon:3052310 # Mammarenavirus lassaense (Lassa virus) +NCBITaxon:3052303 # Mammarenavirus choriomeningitidis (Lymphocytic choriomeningitis virus) +NCBITaxon:3052317 # Mammarenavirus machupoense (Machupo virus) NCBITaxon:11676 # Human immunodeficiency virus 1 NCBITaxon:11709 # Human immunodeficiency virus 2 NCBITaxon:1173061 # Geotrichum candidum; previously Galactomyces candidum & NCBITaxon:27317, Galactomyces geotrichum @@ -65,7 +65,7 @@ NCBITaxon:121759 # Paracoccidioides brasiliensis NCBITaxon:12455 # Borna disease virus NCBITaxon:1678143 # Paslahepevirus balayani; previously NCBITaxon:12461, Hepatitis E virus NCBITaxon:12475 # Hepatitis delta virus -NCBITaxon:1980467 # Dobrava-Belgrade orthohantavirus +NCBITaxon:3052477 # Orthohantavirus dobravaense (Dobrava-Belgrade orthohantavirus) NCBITaxon:12542 # Omsk hemorrhagic fever virus NCBITaxon:12637 # Dengue virus NCBITaxon:127007 # Rhipicephalus pumilio @@ -119,18 +119,18 @@ NCBITaxon:197911 # Influenzavirus A NCBITaxon:197912 # Influenzavirus B NCBITaxon:197913 # Influenzavirus C NCBITaxon:1980456 # Andes orthohantavirus -NCBITaxon:1980459 # Bayou orthohantavirus -NCBITaxon:1980471 # Hantaan orthohantavirus -NCBITaxon:1980476 # Laguna Negra orthohantavirus -NCBITaxon:1980486 # Puumala orthohantavirus -NCBITaxon:1980490 # Seoul orthohantavirus -NCBITaxon:1980491 # Sin Nombre orthohantavirus -NCBITaxon:1980519 # Crimean-Congo hemorrhagic fever orthonairovirus +NCBITaxon:3052470 # Orthohantavirus bayoui (Bayou orthohantavirus) +NCBITaxon:3052480 # Orthohantavirus hantanense (Hantaan orthohantavirus) +NCBITaxon:3052489 # Orthohantavirus negraense (Laguna Negra orthohantavirus) +NCBITaxon:3052493 # Orthohantavirus puumalaense (Puumala orthohantavirus) +NCBITaxon:3052498 # Orthohantavirus seoulense (Seoul orthohantavirus) +NCBITaxon:3052499 # Orthohantavirus sinnombreense (Sin Nombre orthohantavirus) +NCBITaxon:3052518 # Orthonairovirus haemorrhagiae (Crimean-Congo hemorrhagic fever orthonairovirus) NCBITaxon:2 # Bacteria NCBITaxon:206160 # Sandfly fever Naples virus NCBITaxon:2104 # Mycoplasma pneumoniae NCBITaxon:2169991 # Argentinian mammarenavirus -NCBITaxon:2169992 # Brazilian mammarenavirus +NCBITaxon:3052299 # Mammarenavirus brazilense (Brazilian mammarenavirus) NCBITaxon:226665 # Rickettsia heilongjiangensis NCBITaxon:235 # Brucella abortus NCBITaxon:2560319 # Avian orthoavulavirus 1 (replaces 'Newcastle disease virus') @@ -210,16 +210,16 @@ NCBITaxon:42862 # Rickettsia felis NCBITaxon:43075 # Trichomonas tenax NCBITaxon:446 # Legionella pneumophila NCBITaxon:447135 # Myodes glareolus -NCBITaxon:45219 # Guanarito virus +NCBITaxon:3052307 # Mammarenavirus guanaritoense (Guanarito virus) NCBITaxon:45659 # Human adenovirus 3 NCBITaxon:46839 # Colorado tick fever virus -NCBITaxon:46919 # Whitewater Arroyo virus +NCBITaxon:3052331 # Mammarenavirus whitewaterense (Whitewater Arroyo virus) NCBITaxon:4751 # Fungi NCBITaxon:485 # Neisseria gonorrhoeae NCBITaxon:4890 # Ascomycota NCBITaxon:63402 # Nannizzia gypsea; previously NCBITaxon:489714, Microsporum gypseum NCBITaxon:49202 # Dermacentor marginatus -NCBITaxon:499556 # Chapare virus +NCBITaxon:3052302 # Mammarenavirus chapareense (Chapare virus) NCBITaxon:5039 # Blastomyces dermatitidis NCBITaxon:5052 # Aspergillus NCBITaxon:51031 # Necator americanus