From 63f0826d707d879150c15f826db5aeca43c70039 Mon Sep 17 00:00:00 2001 From: Devashish Tripathi Date: Sat, 17 Feb 2024 12:51:43 +0530 Subject: [PATCH] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 0a0ec6a..f228360 100644 --- a/README.md +++ b/README.md @@ -24,7 +24,7 @@ pip install smcpp-pipeline from smcpp_pipeline.smcpp_pipeline import vcf2smc,estimate,plot 1) Function to convert vcf file to smc format - def vcf2smc(popfile,chromosome_info,gaps_bed,num_workers): + def vcf2smc(popfile,chromosome_info,gaps_bed=None,num_workers=None): 2) Function to estimate the demographic history of a single population def estimate(popfile,mu = 1.25e-8,spline = "piecewise",start_time = 100, end_time=100000,knots = 8): 3) Function to generate plots from the model.json file obtained using estimate function